Browse Element(s) Details


OsAffx.7441.1.S1_at

Description tigr:9639.m04414
TID=OsAffx.7441.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=diphenol oxidase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4739011/11laccase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47350OsAffx.7440.1.S1_at11/1111+27925261..27928087Glycosyl hydrolase family 3 C terminal domain containing protein
LOC_Os11g47360NANA11+27932743..27935485retrotransposon protein, putative, unclassified
LOC_Os11g47370Os.18443.1.S1_at7/1111+27938905..27941284expressed protein
LOC_Os11g47379NANA11+27942471..27943166NA
LOC_Os11g47390OsAffx.7441.1.S1_at11/1111+27950341..27952587laccase, putative
LOC_Os11g47390OsAffx.29827.1.S1_at1/1111+27950341..27952587laccase, putative
LOC_Os11g47400NANA11+27957191..27958430hypothetical protein
LOC_Os11g47410OsAffx.19419.1.S1_at11/1111+27958965..27960942AT hook motif-containing protein, putative
LOC_Os11g47420Os.31312.5.S1_x_at3/1111+27963991..27967292retrotransposon protein, putative, unclassified
LOC_Os11g47420Os.31312.2.S1_x_at2/1111+27963991..27967292retrotransposon protein, putative, unclassified
LOC_Os11g47430NANA11+27967917..27974072retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7441.1.S1_at--421--2591Chr11:27951043..27951067 (25 bp)
AACGCAACCGACACGGCGTGCAAGG
LOC_Os11g47390
OsAffx.7441.1.S1_at--790--7331Chr11:27951026..27951050 (25 bp)
GTGCAAGGGACCCAAGGGCAACACT
LOC_Os11g47390
OsAffx.7441.1.S1_at--928--2871Chr11:27951013..27951037 (25 bp)
AAGGGCAACACTACGCGTTTCGCGG
LOC_Os11g47390
OsAffx.7441.1.S1_at--105--2191Chr11:27951006..27951030 (25 bp)
ACACTACGCGTTTCGCGGCGAGCCT
LOC_Os11g47390
OsAffx.7441.1.S1_at--422--5871Chr11:27950987..27951011 (25 bp)
GAGCCTCAACAACGTCAGCTTCGTC
LOC_Os11g47390
OsAffx.7441.1.S1_at--1114--9351Chr11:27950952..27950976 (25 bp)
TCGACGTCCTTCACGCGTACTACTA
LOC_Os11g47390
OsAffx.7441.1.S1_at--975--7411Chr11:27950779..27950803 (25 bp)
GTGTTCCAGGACACGTCCTTCGAGA
LOC_Os11g47390
OsAffx.7441.1.S1_at--860--7331Chr11:27950706..27950730 (25 bp)
GGTCCGGTAAGTTCGACGACCGCAG
LOC_Os11g47390
OsAffx.7441.1.S1_at--208--4511Chr11:27950651..27950675 (25 bp)
GCCGTACCAGAGCACAGTCTCCGTG
LOC_Os11g47390
OsAffx.7441.1.S1_at--103--1371Chr11:27950643..27950667 (25 bp)
AGAGCACAGTCTCCGTGCCCAAGGC
LOC_Os11g47390
OsAffx.7441.1.S1_at--18--7611Chr11:27950404..27950428 (25 bp)
GGGAATGAATACTGTGTTCATCGTG
LOC_Os11g47390
Target Sequence 
AACGCAACCGACACGGCGTGCAAGGGACCCAAGGGCAACACTACGCGTTTCGCGGCGAGCCTCAACAACGTCAGCTTCGT
CAGCCCGGCCATCGACGTCCTTCACGCGTACTACTACGGCAGCGGCCGCGGCGTGTACGAGGACGACTTCCCTAACAACC
CGGCGCCCGTCTTCGTCAACCTCACCGGCGACAACGACAGGCCCGGGGTGACGAAGCACGGCGCCAAGGTGAAGGTGCTG
GAGTACGGCACCGTGGTGGAGGTGGTGTTCCAGGACACGTCCTTCGAGAGCCACCCAATGCACCTCCACGGCTTCGCCTT
CTACGTCGTGGGACTAGGGTCCGGTAAGTTCGACGACCGCAGGGACCCGGCCACCTACAACCTGCTCGACCCGCCGTACC
AGAGCACAGTCTCCGTGCCCAAGGCCGGCTGGGCCGCAATCCGCTTCCGCGCAGACAATCCAGGTGTGTGGTTCATGCAT
TGCCATTTTGATCGACACATGGTGTGGGGAATGAATACTGTGTTCATCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7441.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis