Browse Element(s) Details


OsAffx.7492.1.S1_at

Description tigr:9640.m00476
TID=OsAffx.7492.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0558011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05540Os.13516.1.S1_at11/1112+2534929..2537877Ser/Thr protein phosphatase family protein, expressed
LOC_Os12g05540OsAffx.9512.1.S1_x_at1/1112+2534929..2537877Ser/Thr protein phosphatase family protein, expressed
LOC_Os12g05550Os.10665.1.S1_at11/1112+2545330..2546900sialyltransferase, putative, expressed
LOC_Os12g05560OsAffx.7491.1.S1_x_at11/1112+2550195..2550440hypothetical protein
LOC_Os12g05570Os.46012.2.S1_x_at5/1112+2554166..2558875retrotransposon protein, putative, unclassified
LOC_Os12g05570Os.27088.1.A1_x_at3/1112+2554166..2558875retrotransposon protein, putative, unclassified
LOC_Os12g05570Os.46012.3.S1_x_at3/1112+2554166..2558875retrotransposon protein, putative, unclassified
LOC_Os12g05580OsAffx.7492.1.S1_at11/1112+2561789..2562382expressed protein
LOC_Os12g05590Os.57548.1.S1_at11/1112+2564215..2565564CENTRORADIALIS, putative, expressed
LOC_Os12g05600Os.52940.1.S1_at11/1112+2570685..2572881hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os12g05609OsAffx.31600.1.S1_at11/1112+2573327..2574586F-box domain containing protein
LOC_Os12g05620OsAffx.19507.1.S1_at10/1112+2582896..2585408hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7492.1.S1_at--950--3111Chr12:2561900..2561924 (25 bp)
AATATTGGGATGATCGTGACTGACG
LOC_Os12g05580
OsAffx.7492.1.S1_at--1141--8831Chr12:2561910..2561934 (25 bp)
TGATCGTGACTGACGACGATGACGA
LOC_Os12g05580
OsAffx.7492.1.S1_at--911--7351Chr12:2561985..2562009 (25 bp)
GTGACGGCGAAGAGTACTACACCAA
LOC_Os12g05580
OsAffx.7492.1.S1_at--979--5351Chr12:2561993..2562017 (25 bp)
GAAGAGTACTACACCAAGCGCCTCG
LOC_Os12g05580
OsAffx.7492.1.S1_at--657--9851Chr12:2562002..2562026 (25 bp)
TACACCAAGCGCCTCGTGACGAGCA
LOC_Os12g05580
OsAffx.7492.1.S1_at--581--4451Chr12:2562012..2562036 (25 bp)
GCCTCGTGACGAGCAGCTGTTGCGT
LOC_Os12g05580
OsAffx.7492.1.S1_at--1157--5771Chr12:2562019..2562043 (25 bp)
GACGAGCAGCTGTTGCGTCGCTGTC
LOC_Os12g05580
OsAffx.7492.1.S1_at--871--7191Chr12:2562173..2562197 (25 bp)
GTCGTCTCGTCGTATCCCGTTGGCC
LOC_Os12g05580
OsAffx.7492.1.S1_at--1038--4991Chr12:2562291..2562315 (25 bp)
GCAGGACGCGTATTGGCCGCCACAA
LOC_Os12g05580
OsAffx.7492.1.S1_at--101--4411Chr12:2562309..2562333 (25 bp)
GCCACAACAGCAATAACTCTGCGAG
LOC_Os12g05580
OsAffx.7492.1.S1_at--408--3091Chr12:2562320..2562344 (25 bp)
AATAACTCTGCGAGGTTCTCCTTCT
LOC_Os12g05580
Target Sequence 
AATATTGGGATGATCGTGACTGACGACGATGACGAAGACGAAGACGACGAGCTGTTCGAGCTCGACATCGCCCTCATCGA
CCACCGTGACGGCGAAGAGTACTACACCAAGCGCCTCGTGACGAGCAGCTGTTGCGTCGCTGTCGCCGCCGCAGCCGCCG
CCGCCGACGACGACGACGAAGAAGACGGCGGTGACGCGCTCCTAGCCAACTGCCTGCTGCCGGTGAGCTCGGTCAGCAGG
GCGGTGCCGGTGACGGCGAGCAGCAGCTTCGTCGTCGTCTCGTCGTATCCCGTTGGCCGCCGCTACCACGGCGGCGGTGG
GTGCGGCGACGACGACGACGACGACGCTAGCTGGAGGTGGAGGAGGTTCTTCTTCACGTCCGGCGGCGGTGGCAGGACGC
GTATTGGCCGCCACAACAGCAATAACTCTGCGAGGTTCTCCTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7492.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis