Browse Element(s) Details


OsAffx.7518.1.S1_at

Description tigr:9640.m00707
TID=OsAffx.7518.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0776011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07730Os.9655.1.S1_s_at11/1112+3878353..3884319SWIRM domain containing protein, expressed
LOC_Os12g07730Os.9655.1.S1_at11/1112+3878353..3884319SWIRM domain containing protein, expressed
LOC_Os12g07740Os.12630.1.S1_at11/1112+3884395..3888692Eukaryotic translation initiation factor 2 gamma subunit, putative, expressed
LOC_Os12g07750OsAffx.22848.4.S1_at2/1112+3892614..3897332retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g07750OsAffx.22848.3.S1_x_at2/1112+3892614..3897332retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g07750OsAffx.22848.4.S1_x_at1/1112+3892614..3897332retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g07760OsAffx.7518.1.S1_at11/1112+3908135..3908659hypothetical protein
LOC_Os12g07760Os.19951.1.S1_x_at1/1112+3908135..3908659hypothetical protein
LOC_Os12g07770NANA12+3917238..3920109transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g07780Os.14642.1.S1_at11/1112+3931470..3934989Eukaryotic aspartyl protease family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7518.1.S1_at--464--9211Chr12:3908260..3908284 (25 bp)
TCCATCGGCGCCCTTTCGTTTTCTT
LOC_Os12g07760
OsAffx.7518.1.S1_at--143--10391Chr12:3908289..3908313 (25 bp)
TTTTCTTCGTTCTTGGTTCTGCTTC
LOC_Os12g07760
OsAffx.7518.1.S1_at--221--3651Chr12:3908293..3908317 (25 bp)
CTTCGTTCTTGGTTCTGCTTCTTTT
LOC_Os12g07760
OsAffx.7518.1.S1_at--1023--7251Chr12:3908322..3908346 (25 bp)
GTCCTCTCCGTTTTGCTGTTGCTAT
LOC_Os12g07760
OsAffx.7518.1.S1_at--137--10691Chr12:3908366..3908390 (25 bp)
TTGCCGTCGGGCACGATGCTAGTGT
LOC_Os12g07760
OsAffx.7518.1.S1_at--1120--9071Chr12:3908382..3908406 (25 bp)
TGCTAGTGTGCAGCACGTGGCCAGT
LOC_Os12g07760
OsAffx.7518.1.S1_at--329--7551Chr12:3908398..3908422 (25 bp)
GTGGCCAGTGCATGGCCTCGTCGCA
LOC_Os12g07760
OsAffx.7518.1.S1_at--563--7231Chr12:3908417..3908441 (25 bp)
GTCGCACGTTGCGTCGTACAGGCGC
LOC_Os12g07760
OsAffx.7518.1.S1_at--1140--2531Chr12:3908528..3908552 (25 bp)
AACTCCGTGTCTGTCTACCGTGATT
LOC_Os12g07760
OsAffx.7518.1.S1_at--840--7171Chr12:3908536..3908560 (25 bp)
GTCTGTCTACCGTGATTTTCACCAA
LOC_Os12g07760
OsAffx.7518.1.S1_at--1151--9951Chr12:3908543..3908567 (25 bp)
TACCGTGATTTTCACCAATCGGCAT
LOC_Os12g07760
Target Sequence 
TCCATCGGCGCCCTTTCGTTTTCTTTTCTTTTTCTTCGTTCTTGGTTCTGCTTCTTTTCTTTGTCCTCTCCGTTTTGCTG
TTGCTATCATGGCGGCCGGCGTGGGCTTGCCGTCGGGCACGATGCTAGTGTGCAGCACGTGGCCAGTGCATGGCCTCGTC
GCACGTTGCGTCGTACAGGCGCGGCCGTGGCACCGGGTGCATGCCAGCGCGGGGCGCGTGTTCGCGGCCGTGGCGCGGGT
TCGCCGCCATGCCGTGTCGCGGCACGCCAACTCCGTGTCTGTCTACCGTGATTTTCACCAATCGGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7518.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis