Browse Element(s) Details


OsAffx.7535.1.S1_at

Description tigr:9640.m00869
TID=OsAffx.7535.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0931011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g09290Os.5668.2.S1_at11/1112+4862261..4873873tRNA pseudouridine synthase family protein, putative, expressed
LOC_Os12g09290Os.5668.2.S1_x_at11/1112+4862261..4873873tRNA pseudouridine synthase family protein, putative, expressed
LOC_Os12g09290Os.5668.1.S1_at10/1112+4862261..4873873tRNA pseudouridine synthase family protein, putative, expressed
LOC_Os12g09290Os.50231.1.S1_x_at3/1112+4862261..4873873tRNA pseudouridine synthase family protein, putative, expressed
LOC_Os12g09300Os.47745.1.S1_at11/1112+4880023..4883861amino acid permease I, putative, expressed
LOC_Os12g09310OsAffx.7535.1.S1_at11/1112+4889982..4890461hypothetical protein
LOC_Os12g09320OsAffx.7536.1.S1_at11/1112+4892122..4893528amino acid carrier, putative
LOC_Os12g09330OsAffx.10071.1.S1_at5/1112+4894827..4896151transposon protein, putative, Mariner sub-class
LOC_Os12g09340OsAffx.31659.2.S1_at11/1112+4896621..4897088hypothetical protein
LOC_Os12g09340OsAffx.31659.1.S1_s_at11/1112+4896621..4897088hypothetical protein
LOC_Os12g09350Os.52242.1.S1_at1/1112+4903456..4906785transposon protein, putative, Mariner sub-class
LOC_Os12g09360OsAffx.31660.2.S1_x_at10/1112+4907373..4909076expressed protein
LOC_Os12g09360OsAffx.31660.1.S1_at5/1112+4907373..4909076expressed protein
LOC_Os12g09360OsAffx.31660.3.S1_x_at4/1112+4907373..4909076expressed protein
LOC_Os12g09370OsAffx.19573.1.S1_at11/1112+4909942..4910623hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7535.1.S1_at--997--3551Chr12:4890018..4890042 (25 bp)
CATCTTGTCGCTCCCATGTTGTCTC
LOC_Os12g09310
OsAffx.7535.1.S1_at--401--731Chr12:4890033..4890057 (25 bp)
ATGTTGTCTCTCTCCTCACTTGCTA
LOC_Os12g09310
OsAffx.7535.1.S1_at--722--9252Chr12:4890045..4890069 (25 bp)
TCCTCACTTGCTAACCACGGCAAGA
LOC_Os12g09310
OsAffx.7535.1.S1_at--31--9812Chr12:4890056..4890080 (25 bp)
TAACCACGGCAAGATCACAGCAAAG
LOC_Os12g09310
OsAffx.7535.1.S1_at--248--2811Chr12:4890066..4890090 (25 bp)
AAGATCACAGCAAAGGAGACAGTCA
LOC_Os12g09310
OsAffx.7535.1.S1_at--125--8071Chr12:4890080..4890104 (25 bp)
GGAGACAGTCAAAAGAACAATAGGC
LOC_Os12g09310
OsAffx.7535.1.S1_at--946--10071Chr12:4890100..4890124 (25 bp)
TAGGCAAGGTAGCAAGAGATCGACT
LOC_Os12g09310
OsAffx.7535.1.S1_at--1137--6372Chr12:4890117..4890141 (25 bp)
GATCGACTTGACGTAGACGAGCGGA
LOC_Os12g09310
OsAffx.7535.1.S1_at--203--9372Chr12:4890119..4890143 (25 bp)
TCGACTTGACGTAGACGAGCGGATG
LOC_Os12g09310
OsAffx.7535.1.S1_at--685--791Chr12:4890141..4890165 (25 bp)
ATGGGAACGGTGTTGGCATCGTGGA
LOC_Os12g09310
OsAffx.7535.1.S1_at--1018--3912Chr12:4890176..4890200 (25 bp)
CGGCCGCGGGCGTCCTGGAGGAAGT
LOC_Os12g09310
Target Sequence 
CATCTTGTCGCTCCCATGTTGTCTCTCTCCTCACTTGCTAACCACGGCAAGATCACAGCAAAGGAGACAGTCAAAAGAAC
AATAGGCAAGGTAGCAAGAGATCGACTTGACGTAGACGAGCGGATGGGAACGGTGTTGGCATCGTGGAGGAAGACGGCCG
GCCGCGGGCGTCCTGGAGGAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7535.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis