Browse Element(s) Details


OsAffx.7556.1.S1_at

Description tigr:9640.m01092
TID=OsAffx.7556.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1149011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g11430Os.2358.1.S1_at3/1112+6173335..6178613hypothetical protein
LOC_Os12g11430Os.40360.1.S1_x_at1/1112+6173335..6178613hypothetical protein
LOC_Os12g11440OsAffx.7555.1.S1_at10/1112+6182914..6184609hypothetical protein
LOC_Os12g11450OsAffx.19614.1.S1_at11/1112+6191979..6192473hypothetical protein
LOC_Os12g11460NANA12+6193056..6194378retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g11470NANA12+6196546..6196971retrotransposon protein, putative, unclassified
LOC_Os12g11480NANA12+6200270..6201195retrotransposon protein, putative, unclassified
LOC_Os12g11490OsAffx.7556.1.S1_at11/1112+6202087..6205412hypothetical protein
LOC_Os12g11500NANA12+6223134..6226115Leucine Rich Repeat family protein, expressed
LOC_Os12g11510OsAffx.31705.1.S1_at11/1112+6230258..6234418Leucine Rich Repeat family protein
LOC_Os12g11510OsAffx.8678.1.S1_at8/1112+6230258..6234418Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7556.1.S1_at--384--10651Chr12:6203088..6203112 (25 bp)
TTCGCCAAGAGGTTAGCCAAGCGGA
LOC_Os12g11490
OsAffx.7556.1.S1_at--880--10411Chr12:6203076..6203100 (25 bp)
TTAGCCAAGCGGAGGCAAAAACCAA
LOC_Os12g11490
OsAffx.7556.1.S1_at--686--791Chr12:6203023..6203047 (25 bp)
ATGGTGAAGGCAACCGAGTTTGTGA
LOC_Os12g11490
OsAffx.7556.1.S1_at--294--2611Chr12:6203012..6203036 (25 bp)
AACCGAGTTTGTGAAGACCGCTTGC
LOC_Os12g11490
OsAffx.7556.1.S1_at--341--10771Chr12:6203004..6203028 (25 bp)
TTGTGAAGACCGCTTGCCAGACGCT
LOC_Os12g11490
OsAffx.7556.1.S1_at--1032--4551Chr12:6202867..6202891 (25 bp)
GCGCCACTGCATATGGTGATTGCTG
LOC_Os12g11490
OsAffx.7556.1.S1_at--126--7931Chr12:6202187..6202211 (25 bp)
GGATACGGGCGCACCCCAGGCGATC
LOC_Os12g11490
OsAffx.7556.1.S1_at--904--8011Chr12:6202159..6202183 (25 bp)
GGAGGACTACGATTGTGTCCATATA
LOC_Os12g11490
OsAffx.7556.1.S1_at--342--6611Chr12:6202149..6202173 (25 bp)
GATTGTGTCCATATAGAACGCCGGG
LOC_Os12g11490
OsAffx.7556.1.S1_at--82--7432Chr12:3262739..3262763 (25 bp)
GTGTCCATATAGAACGCCGGGAGGA
NONE
OsAffx.7556.1.S1_at--791--4491Chr12:6202130..6202154 (25 bp)
GCCGGGAGGACATGGTTTGCTTTTG
LOC_Os12g11490
Target Sequence 
TTCGCCAAGAGGTTAGCCAAGCGGAGGCAAAAACCAAGAGGGAGGCGCAACGGTTCGCGCGGGAGATGGTGAAGGCAACC
GAGTTTGTGAAGACCGCTTGCCAGACGCTCCGCCTTGCCTTTCCGACATGGGGGCGAGGGTGCGTGGAGTCCCTAGCGAA
GATGCTTCCGCCTTTGACTTCTCGGAGTGGACTCAGCAGGCCCGCGGTGCGGTCTCGGACTGCGCCACTGCATATGGTGA
TTGCTGTGCACGCATGTCGGCGGCCTTCACCATGGGCCTCCTGCAGCAGTTCGGCTGTGAGCACGTCGCTGAGTTCCCTA
ACTTTGCGAATGGGGACTAGGAGCTACAAGGTTTTGAAGGTTGCCGGCTGGATACGGGCGCACCCCAGGCGATCCCTGGA
GGACTACGATTGTGTCCATATAGAACGCCGGGAGGACATGGTTTGCTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7556.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis