Browse Element(s) Details


OsAffx.7583.1.S1_at

Description tigr:9640.m01312
TID=OsAffx.7583.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1358011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g13540OsAffx.31728.1.S1_at11/1112+7597078..7597347hypothetical protein
LOC_Os12g13550Os.53109.1.S1_at11/1112+7599452..7604327NB-ARC domain containing protein, expressed
LOC_Os12g13560NANA12+7608254..7608580hypothetical protein
LOC_Os12g13570Os.23747.1.S1_s_at11/1112+7609711..7617485Myb-like DNA-binding domain containing protein, expressed
LOC_Os12g13580OsAffx.7583.1.S1_at11/1112+7619064..7622173hypothetical protein
LOC_Os12g13590Os.11598.1.S1_at11/1112+7627909..7641698Exocyst complex component Sec10, putative, expressed
LOC_Os12g13600NANA12+7645352..7645633hypothetical protein
LOC_Os12g13610OsAffx.19652.1.S1_at11/1112+7647146..7647834expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7583.1.S1_at--358--891Chr12:7619108..7619132 (25 bp)
AGGCTATTCCCTCGATAAAAACAAG
LOC_Os12g13580
OsAffx.7583.1.S1_at--1035--2531Chr12:7620982..7621006 (25 bp)
AACTCCGTCCGCTTAAGTACATGCA
LOC_Os12g13580
OsAffx.7583.1.S1_at--30--5891Chr12:7621033..7621057 (25 bp)
GAGCGCGACTGCTCTGCATCGGTTC
LOC_Os12g13580
OsAffx.7583.1.S1_at--804--4971Chr12:7621048..7621072 (25 bp)
GCATCGGTTCTCCACGGTATTGTCT
LOC_Os12g13580
OsAffx.7583.1.S1_at--659--2511Chr12:7621123..7621147 (25 bp)
AACATATCTATTGGTGGAGGCGCTG
LOC_Os12g13580
OsAffx.7583.1.S1_at--810--9591Chr12:7621222..7621246 (25 bp)
TCATCTAGTACCAAAGCGTTCTCCG
LOC_Os12g13580
OsAffx.7583.1.S1_at--486--5111Chr12:7621651..7621675 (25 bp)
GCACTCCTTTTCAACTGGTGACCAT
LOC_Os12g13580
OsAffx.7583.1.S1_at--111--7771Chr12:7621667..7621691 (25 bp)
GGTGACCATCCTTTTCTTTAAGCAA
LOC_Os12g13580
OsAffx.7583.1.S1_at--1161--9751Chr12:7621685..7621709 (25 bp)
TAAGCAACGATCACCACTAGCGTGC
LOC_Os12g13580
OsAffx.7583.1.S1_at--130--2031Chr12:7621700..7622065 (25 bp)
ACTAGCGTGCCCAGTACCAATGGAA
LOC_Os12g13580
OsAffx.7583.1.S1_at--11--2591Chr12:7622079..7622103 (25 bp)
AACGAAATTCTAAGCTTCCAAATGA
LOC_Os12g13580
Target Sequence 
AGGCTATTCCCTCGATAAAAACAAGAGGGGCCTTCGAAACTCCGTCCGCTTAAGTACATGCACGGGTAGGCGGCAATCAA
GTTTTTGGGAGCGCGACTGCTCTGCATCGGTTCTCCACGGTATTGTCTTCTTCCTCTACATCGACTCCCTACTCTGCTTC
GTCTACTTCCACTACTTCAACATATCTATTGGTGGAGGCGCTGGTGGAGGTGGCGGCAAGGACACTGGAGAAGGTGAGAA
CGTCAACATCAACGGAGGCAACAACACCAATAATGCCTCATCTAGTACCAAAGCGTTCTCCGGCACTCCTTTTCAACTGG
TGACCATCCTTTTCTTTAAGCAACGATCACCACTAGCGTGCCCAGTACCAATGGAAGATCTTGATTTTCAACGAAATTCT
AAGCTTCCAAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7583.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis