Browse Element(s) Details


OsAffx.7684.1.S1_at

Description tigr:9640.m02299
TID=OsAffx.7684.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2415011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g24120NANA12+13720729..13723763retrotransposon protein, putative, unclassified
LOC_Os12g24130OsAffx.19794.1.S1_at10/1112+13732364..13735966hypothetical protein
LOC_Os12g24130Os.55313.1.S1_at1/1112+13732364..13735966hypothetical protein
LOC_Os12g24140OsAffx.31860.1.S1_at11/1112+13736781..13737740Protein kinase domain containing protein
LOC_Os12g24150OsAffx.7684.1.S1_at11/1112+13743785..13744213hypothetical protein
LOC_Os12g24160Os.49985.1.S1_at2/1112+13747297..13751274retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g24160OsAffx.17730.1.S1_at1/1112+13747297..13751274retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g24170Os.52193.1.S1_at11/1112+13758669..13761266Galactose binding lectin domain containing protein, expressed
LOC_Os12g24184Os.50840.1.S1_at10/1112+13762038..13779623Beta-galactosidase precursor, putative, expressed
LOC_Os12g24184OsAffx.29203.3.A1_x_at1/1112+13762038..13779623Beta-galactosidase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7684.1.S1_at--925--7711Chr12:13743925..13743949 (25 bp)
GGTGGGTGTACCATCATCGGCCGCA
LOC_Os12g24150
OsAffx.7684.1.S1_at--327--7751Chr12:13743929..13743953 (25 bp)
GGTGTACCATCATCGGCCGCAGCGG
LOC_Os12g24150
OsAffx.7684.1.S1_at--1015--5731Chr12:13743958..13743982 (25 bp)
GACGGCTTGGACATCGACGGATCGA
LOC_Os12g24150
OsAffx.7684.1.S1_at--148--5671Chr12:13743967..13743991 (25 bp)
GACATCGACGGATCGACCATCTGCT
LOC_Os12g24150
OsAffx.7684.1.S1_at--466--4871Chr12:13744010..13744034 (25 bp)
GCTATCCCTGCCTGCCGTGATGACA
LOC_Os12g24150
OsAffx.7684.1.S1_at--1158--7771Chr12:13744077..13744101 (25 bp)
GGTGCGGAGACCTTGACCTGACATT
LOC_Os12g24150
OsAffx.7684.1.S1_at--27--1391Chr12:13744084..13744108 (25 bp)
AGACCTTGACCTGACATTCGCTGAG
LOC_Os12g24150
OsAffx.7684.1.S1_at--334--10771Chr12:13744089..13744113 (25 bp)
TTGACCTGACATTCGCTGAGCTCGG
LOC_Os12g24150
OsAffx.7684.1.S1_at--75--7851Chr12:13744122..13744146 (25 bp)
GGTACAGTGGGAAGCTCGCCCTCGC
LOC_Os12g24150
OsAffx.7684.1.S1_at--725--8011Chr12:13744148..13744172 (25 bp)
GGAGGTACACCTACCCATGGCGGTC
LOC_Os12g24150
OsAffx.7684.1.S1_at--1002--3711Chr12:13744158..13744182 (25 bp)
CTACCCATGGCGGTCCTGGGAAGAT
LOC_Os12g24150
Target Sequence 
GGTGGGTGTACCATCATCGGCCGCAGCGGCGCCGACGGCTTGGACATCGACGGATCGACCATCTGCTCCTCCGCGGCAGC
CACTCGCTATCCCTGCCTGCCGTGATGACACCGCCTCCGCCCAAAATGGAGCTCGGGACAGGCAATGGCGGCGGTGCGGA
GACCTTGACCTGACATTCGCTGAGCTCGGAGAAGACGGGTACAGTGGGAAGCTCGCCCTCGCCGGAGGTACACCTACCCA
TGGCGGTCCTGGGAAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7684.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis