Browse Element(s) Details


OsAffx.773.1.S1_x_at

Description gb:NM_192919.1
DB_XREF= gi:34912921
GEN=P0688A04.31
TID=OsAffx.773.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0688A04.31 (P0688A04.31), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g477901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47730Os.8604.1.S1_a_at11/1111+28235028..28236831expressed protein
LOC_Os11g47740OsAffx.31527.1.S1_at11/1111+28242676..28243729hypothetical protein
LOC_Os11g47750OsAffx.31528.1.S1_x_at11/1111+28244398..28245655hypothetical protein
LOC_Os11g47750OsAffx.31528.1.S1_at9/1111+28244398..28245655hypothetical protein
LOC_Os11g47760Os.57477.1.S1_x_at11/1111+28246237..28250545Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os11g47760Os.14.1.S1_x_at11/1111+28246237..28250545Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os11g47770OsAffx.31529.1.S1_at9/1111+28251466..28253263selT/selW/selH selenoprotein domain containing protein, expressed
LOC_Os11g47780OsAffx.7445.1.S1_at11/1111+28254030..28257720NB-ARC domain containing protein
LOC_Os11g47790OsAffx.19431.1.S1_at9/1111+28260460..28262218hypothetical protein
LOC_Os11g47790OsAffx.773.1.S1_x_at1/1111+28260460..28262218hypothetical protein
LOC_Os11g47800Os.11025.1.S1_at11/1111+28262762..28266232GTP1/OBG family protein, expressed
LOC_Os11g47800OsAffx.29207.1.S1_x_at1/1111+28262762..28266232GTP1/OBG family protein, expressed
LOC_Os11g47820Os.8051.1.S1_at11/1111+28280830..28284801Glucan endo-1,3-beta-glucosidase precursor, putative, expressed
LOC_Os11g47820Os.8051.2.S1_x_at11/1111+28280830..28284801Glucan endo-1,3-beta-glucosidase precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.773.1.S1_x_at--935--3931Chr01:25456933..25456957 (25 bp)
CGGCGTCGGATTTGCGCGAGAAGGT
NONE
OsAffx.773.1.S1_x_at--929--1051Chr01:25456877..25456901 (25 bp)
AGGGTGTGGCACAGTCGACGACCGT
NONE
OsAffx.773.1.S1_x_at--248--4631Chr01:25456848..25456872 (25 bp)
GCGAGGCCGTTGACCAGTGTGACTA
NONE
OsAffx.773.1.S1_x_at--1057--6651Chr01:25456840..25456864 (25 bp)
GTTGACCAGTGTGACTACGGATGCA
NONE
OsAffx.773.1.S1_x_at--1160--8671Chr01:25456831..25456855 (25 bp)
TGTGACTACGGATGCAGATGCCGAC
NONE
OsAffx.773.1.S1_x_at--1037--9911Chr01:25456825..25456849 (25 bp)
TACGGATGCAGATGCCGACACCGAC
NONE
OsAffx.773.1.S1_x_at--600--991Chr01:25456718..25456742 (25 bp)
AGGAGGCCGTTCTCGCATTCGCCGC
NONE
OsAffx.773.1.S1_x_at--1136--4411Chr01:25456569..25456593 (25 bp)
GCCATCGACCGGAGCCCAATTCAGA
NONE
OsAffx.773.1.S1_x_at--603--4551Chr01:25456556..25456580 (25 bp)
GCCCAATTCAGAGTGAGCAATGTCT
NONE
OsAffx.773.1.S1_x_at--985--5937Chr11:28261616..28261637 (22 bp)
GAGCAATGTCTGGTTTTCGGGTCCA
LOC_Os11g47790
OsAffx.773.1.S1_x_at--948--6072Chr09:11568151..11568171 (21 bp)
GAGTATTCGGTCGACCGAGATAGTT
NONE
Target Sequence 
CGGCGTCGGATTTGCGCGAGAAGGTGGCAATGGTGGGGAATACGATGGTGGGGGAGAGGGTGTGGCACAGTCGACGACCG
TGGAGGCGAGGCCGTTGACCAGTGTGACTACGGATGCAGATGCCGACACCGACCCGGCCGCGCTAGCGCGGCGGCGGGAG
GAGGACGGGGAGGAGGCGGAAGATAGGCGAAAGCCGGAGGAGGCGGTAGCAGAGGAGGAGGCCGTTCTCGCATTCGCCGC
TCGCCATTTCCTCCGCCCCCAGATTCTGTCCCTGCGGCCTCCCGCCGCAGCGCCGTGCCTTGCCATAGCCTCCCGGCCAC
TCGCCACACTCGCCTCGTCCACCTAGCCATGCCTGCCACTGCTCGCCATCGACCGGAGCCCAATTCAGAGTGAGCAATGT
CTGGTTTTCGGGTCCAGGGGAGTATTCGGTCGACCGAGATAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.773.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis