Browse Element(s) Details


OsAffx.7731.1.S1_at

Description tigr:9640.m02790
TID=OsAffx.7731.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2904011/11Protease inhibitor/seed storage/LTP family protein
LOC_Os03g085701/11Phytoene dehydrogenase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g29020OsAffx.22848.3.S1_x_at2/1112+17163736..17169668retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g29020OsAffx.22848.4.S1_at2/1112+17163736..17169668retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g29020OsAffx.22848.4.S1_x_at1/1112+17163736..17169668retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g29030NANA12+17183202..17184485retrotransposon protein, putative, unclassified
LOC_Os12g29040OsAffx.7731.1.S1_at11/1112+17189623..17191235Protease inhibitor/seed storage/LTP family protein
LOC_Os12g29050OsAffx.31921.1.S1_at11/1112+17193965..17194562hypothetical protein
LOC_Os12g29060NANA12+17199000..17202620retrotransposon protein, putative, unclassified
LOC_Os12g29070OsAffx.22699.1.S1_x_at3/1112+17205260..17215469retrotransposon protein, putative, unclassified
LOC_Os12g29070OsAffx.20631.1.S1_x_at2/1112+17205260..17215469retrotransposon protein, putative, unclassified
LOC_Os12g29070Os.15833.1.S1_at1/1112+17205260..17215469retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0016117biological_processcarotenoid biosynthesis
GO:0016120biological_processcarotene biosynthesis
GO:0009507cellular_componentchloroplast
GO:0008289molecular_functionlipid binding
GO:0016166molecular_functionphytoene dehydrogenase activity
GO:0016719molecular_functioncarotene 7,8-desaturase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7731.1.S1_at--48--9254Chr11:19363300..19363319 (20 bp)
TCCTTGGGCCTTATAGCCATCTATA
NONE
OsAffx.7731.1.S1_at--199--10191Chr12:17191148..17191172 (25 bp)
TATAGCCATCTATACAAACGGCAAT
LOC_Os12g29040
OsAffx.7731.1.S1_at--14--2391Chr12:17191136..17191157 (22 bp)
AAACGGCAATCAACTGCCTCATCAT
LOC_Os12g29040
OsAffx.7731.1.S1_at--368--3232Chr03:4393076..4393098 (22 bp)
CAAGAGCTAGCCAAGTATTTCCATT
LOC_Os03g08570
OsAffx.7731.1.S1_at--595--2831Chr12:17190108..17190132 (25 bp)
AAGTATTTCCATTGTCATCTTCTTG
LOC_Os12g29040
OsAffx.7731.1.S1_at--952--10551Chr12:17190089..17190113 (25 bp)
TTCTTGCCATTGTCATTCTCCCACT
LOC_Os12g29040
OsAffx.7731.1.S1_at--364--10231Chr12:17190057..17190081 (25 bp)
TTTGCCCAAGCCAAACAACCTCAAA
LOC_Os12g29040
OsAffx.7731.1.S1_at--835--1711Chr12:17189980..17190004 (25 bp)
ACCACCATCGGTGTCTGTAGAACCA
LOC_Os12g29040
OsAffx.7731.1.S1_at--18--1771Chr12:17189953..17189977 (25 bp)
ACCGGCACCAGTTATAGCACCATCT
LOC_Os12g29040
OsAffx.7731.1.S1_at--351--3911Chr12:17189720..17189744 (25 bp)
CTGGTTGCCTATGTGAGGCTGCGAA
LOC_Os12g29040
OsAffx.7731.1.S1_at--481--4091Chr12:17189699..17189723 (25 bp)
CGAAGATTAACTTCAGTGTCACCGC
LOC_Os12g29040
Target Sequence 
TCCTTGGGCCTTATAGCCATCTATACAAACGGCAATCAACTGCCTCATCATCAGATAATGAAGAACTTTCAAAACAAGAG
CTAGCCAAGTATTTCCATTGTCATCTTCTTGCCATTGTCATTCTCCCACTCTTCTCATTTGCCCAAGCCAAACAACCTCA
AACTCCTCCAAGAAGAAATCCACCACGTGCACCACCATCACCAAGGAGAGCATCACCACCATCGGTGTCTGTAGAACCAA
CACCGGCACCAGTTATAGCACCATCTCCACCACCAGTTGTAGCACCTAGCCAACCACCAACCATAGCACCCACGCAGCCA
CCAACACCATCTGGCGGTAGTCAATGCCCAAGAGAAAATGTAATTGCACTTAATGTGTGCGCACAACTTGATTTGTCCAC
GCTGCTCAACAACCCGACTAAGGCTATGCAAGACTGTTGTCCACCAATCAACAGTCTCTCAAGCACCATTGCCGCTGGTT
GCCTATGTGAGGCTGCGAAGATTAACTTCAGTGTCACCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7731.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis