Browse Element(s) Details


OsAffx.31921.1.S1_at

Description tigr:9640.m02789
TID=OsAffx.31921.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2905011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g29020OsAffx.22848.3.S1_x_at2/1112+17163736..17169668retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g29020OsAffx.22848.4.S1_at2/1112+17163736..17169668retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g29020OsAffx.22848.4.S1_x_at1/1112+17163736..17169668retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g29030NANA12+17183202..17184485retrotransposon protein, putative, unclassified
LOC_Os12g29040OsAffx.7731.1.S1_at11/1112+17189623..17191235Protease inhibitor/seed storage/LTP family protein
LOC_Os12g29050OsAffx.31921.1.S1_at11/1112+17193965..17194562hypothetical protein
LOC_Os12g29060NANA12+17199000..17202620retrotransposon protein, putative, unclassified
LOC_Os12g29070OsAffx.22699.1.S1_x_at3/1112+17205260..17215469retrotransposon protein, putative, unclassified
LOC_Os12g29070OsAffx.20631.1.S1_x_at2/1112+17205260..17215469retrotransposon protein, putative, unclassified
LOC_Os12g29070Os.15833.1.S1_at1/1112+17205260..17215469retrotransposon protein, putative, unclassified
LOC_Os12g29080NANA12+17216942..17217568retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g29090Os.27691.2.S1_x_at1/1112+17219469..17220807retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31921.1.S1_at--757--2351Chr12:17194031..17194055 (25 bp)
AAAGCCCATGTGTTGGGTGCGTTAC
LOC_Os12g29050
OsAffx.31921.1.S1_at--21--9091Chr12:17194048..17194072 (25 bp)
TGCGTTACGGAGTGCGAGATTGAAA
LOC_Os12g29050
OsAffx.31921.1.S1_at--719--5551Chr12:17194069..17194090 (22 bp)
GAAAGCATATATCCACTGCAGTACT
LOC_Os12g29050
OsAffx.31921.1.S1_at--1047--9191Chr12:17194080..17194178 (25 bp)
TCCACTGCAGTACTCATAGATCTTT
LOC_Os12g29050
OsAffx.31921.1.S1_at--763--8111Chr12:17194200..17194224 (25 bp)
GGACGTGTGTGAGATCTTGCCCGAT
LOC_Os12g29050
OsAffx.31921.1.S1_at--199--10671Chr12:17194216..17194240 (25 bp)
TTGCCCGATGGGTGGAGAGATCATT
LOC_Os12g29050
OsAffx.31921.1.S1_at--588--8511Chr12:17194256..17194280 (25 bp)
TGGACAATTTGGATGCGAGGGTAAC
LOC_Os12g29050
OsAffx.31921.1.S1_at--552--7591Chr12:17194275..17194299 (25 bp)
GGTAACACGTACCAAGCGAGACTTG
LOC_Os12g29050
OsAffx.31921.1.S1_at--866--3591Chr12:17194296..17194505 (25 bp)
CTTGGGCCACATTGACTTAGTCGAT
LOC_Os12g29050
OsAffx.31921.1.S1_at--439--8931Chr12:17194494..17194517 (24 bp)
TGACTTAGTCGATGTGGAGATACCA
LOC_Os12g29050
OsAffx.31921.1.S1_at--530--8051Chr12:17194508..17194532 (25 bp)
GGAGATACCACATGAGAACATTCCC
LOC_Os12g29050
Target Sequence 
AAAGCCCATGTGTTGGGTGCGTTACGGAGTGCGAGATTGAAAGCATATATCCACTGCAGTACTCATAGATCTTTAATATT
GCTTAGATTAGGAAAGGACGTGTGTGAGATCTTGCCCGATGGGTGGAGAGATCATTATGATTTTGGAAATATGGACAATT
TGGATGCGAGGGTAACACGTACCAAGCGAGACTTGGGCCACATTGACTTAGTCGATGTGGAGATACCACATGAGAACATT
CCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31921.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis