Browse Element(s) Details


OsAffx.7766.1.S1_at

Description tigr:9640.m03138
TID=OsAffx.7766.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3231010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32250OsAffx.7764.1.S1_at11/1112+19445198..19450073WRKY DNA binding domain containing protein, expressed
LOC_Os12g32250Os.17759.1.A1_s_at11/1112+19445198..19450073WRKY DNA binding domain containing protein, expressed
LOC_Os12g32260OsAffx.31975.1.S1_at11/1112+19452554..19453847expressed protein
LOC_Os12g32260Os.15807.1.S1_s_at11/1112+19452554..19453847expressed protein
LOC_Os12g32280OsAffx.7765.1.S1_at4/1112+19463053..19464159SWIB/MDM2 domain containing protein, expressed
LOC_Os12g32290OsAffx.31976.1.S1_at11/1112+19466662..19467473expressed protein
LOC_Os12g32290OsAffx.31976.1.S1_s_at11/1112+19466662..19467473expressed protein
LOC_Os12g32300OsAffx.31977.1.S1_at11/1112+19472219..19472560hypothetical protein
LOC_Os12g32310OsAffx.7766.1.S1_at10/1112+19473878..19475306hypothetical protein
LOC_Os12g32320NANA12+19476984..19482240expressed protein
LOC_Os12g32330OsAffx.19931.1.S1_at11/1112+19484781..19490116peroxisomal membrane protein 22 kDa, putative, expressed
LOC_Os12g32330OsAffx.12972.1.S1_at1/1112+19484781..19490116peroxisomal membrane protein 22 kDa, putative, expressed
LOC_Os12g32330OsAffx.10482.1.S1_x_at1/1112+19484781..19490116peroxisomal membrane protein 22 kDa, putative, expressed
LOC_Os12g32360Os.11899.1.S1_at11/1112+19490208..19492581expressed protein
LOC_Os12g32370OsAffx.10645.1.S1_at3/1112+19499530..19499847hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7766.1.S1_at--753--8891Chr12:19474445..19474469 (25 bp)
TGAGTCCTATAACCAACCGCTGCAA
LOC_Os12g32310
OsAffx.7766.1.S1_at--207--8951Chr12:19474465..19474489 (25 bp)
TGCAATTTCCTATCTACCCTAAACA
LOC_Os12g32310
OsAffx.7766.1.S1_at--606--8631NONE
TGGGTCCACTTCAATGCGTTTCTAA
NONE
OsAffx.7766.1.S1_at--40--9151Chr12:19474669..19474693 (25 bp)
TGCGTTTCTAATCGCCTCTACAAAG
LOC_Os12g32310
OsAffx.7766.1.S1_at--710--8031Chr12:19474821..19474845 (25 bp)
GGAGTTTACGCTAACCATCTGACCA
LOC_Os12g32310
OsAffx.7766.1.S1_at--73--9691Chr12:19474847..19474871 (25 bp)
TCACGTGCTGCAATGGGCTTCAACA
LOC_Os12g32310
OsAffx.7766.1.S1_at--239--10131Chr12:19474901..19474925 (25 bp)
TATGCTGCAATTGGACCGCACGTAT
LOC_Os12g32310
OsAffx.7766.1.S1_at--1138--11Chr12:19475015..19475036 (22 bp)
ATTGGTGCTTGGAGTCTTCGGATCA
LOC_Os12g32310
OsAffx.7766.1.S1_at--364--3631Chr12:19475027..19475051 (25 bp)
CTTCGGATCATAGCCAATTTCATTT
LOC_Os12g32310
OsAffx.7766.1.S1_at--637--10331Chr12:19475049..19475073 (25 bp)
TTTCAATCCAAGTTTTCATGCTCTG
LOC_Os12g32310
OsAffx.7766.1.S1_at--292--2631Chr12:19475205..19475229 (25 bp)
AACCTCAGTTTTGTCGACCGATATC
LOC_Os12g32310
Target Sequence 
TGAGTCCTATAACCAACCGCTGCAATTTCCTATCTACCCTAAACAACTCACGGAATTTGGTGAGTTGTCAGCATATTACA
ATAAGATGTTTGTGGGTCCACTTCAATGCGTTTCTAATCGCCTCTACAAAGAGGTCACCCTCGTGGACACGAGGTGTCAG
CTTGTGGTTATTGGAGTTTACGCTAACCATCTGACCACTCACGTGCTGCAATGGGCTTCAACATTTGCTAATAATCACGT
TGTTGTGGGAACTATGCTGCAATTGGACCGCACGTATTGGTGCTTGGAGTCTTCGGATCATAGCCAATTTCATTTCAATC
CAAGTTTTCATGCTCTGAATGAATTACATAACTTTCGGTGGTTTGTGGTCAACGGAGAAGTCAACCTCAGTTTTGTCGAC
CGATATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7766.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis