Browse Element(s) Details


OsAffx.7821.1.S1_x_at

Description tigr:9640.m03641
TID=OsAffx.7821.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3752011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37490OsAffx.32069.1.S1_at11/1112+22968670..22970722acetyltransferase, GNAT family protein
LOC_Os12g37500NANA12+22977001..22980420retrotransposon protein, putative, LINE subclass
LOC_Os12g37510Os.27695.1.S1_at11/1112+22982283..22984116UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os12g37520OsAffx.7821.1.S1_x_at11/1112+22994395..22994844hypothetical protein
LOC_Os12g37530Os.8465.1.S1_a_at11/1112+22997410..23001992flagellar biosynthesis protein FLHA, putative, expressed
LOC_Os12g37540Os.2741.4.S1_x_at2/1112+23003155..23004784hypothetical protein
LOC_Os12g37550Os.18608.1.S1_at11/1112+23008967..23011524expressed protein
LOC_Os12g37560Os.8202.1.S1_at9/1112+23015182..23019780phospholipase C, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7821.1.S1_x_at--895--7611Chr12:22994766..22994790 (25 bp)
GGGAGATCCAACCTGACCGGAGTAT
LOC_Os12g37520
OsAffx.7821.1.S1_x_at--206--5951Chr12:22994764..22994788 (25 bp)
GAGATCCAACCTGACCGGAGTATGT
LOC_Os12g37520
OsAffx.7821.1.S1_x_at--99--2635Chr12:22994757..22994781 (25 bp)
AACCTGACCGGAGTATGTCTCCCGA
LOC_Os12g37520
OsAffx.7821.1.S1_x_at--994--7152Chr12:22994741..22994765 (25 bp)
GTCTCCCGACGAGATTGAAACCATC
LOC_Os12g37520
OsAffx.7821.1.S1_x_at--405--4191Chr12:22994737..22994761 (25 bp)
CCCGACGAGATTGAAACCATCGTCA
LOC_Os12g37520
OsAffx.7821.1.S1_x_at--578--7133Chr11:16804575..16804595 (21 bp)
GTCATCAACAATTCGATCTCTCAAG
NONE
OsAffx.7821.1.S1_x_at--729--451Chr12:22994701..22994725 (25 bp)
ATCTCTCAAGATCGACCAAACCTCA
LOC_Os12g37520
OsAffx.7821.1.S1_x_at--1136--431Chr12:22994691..22994715 (25 bp)
ATCGACCAAACCTCAAGATACGTGG
LOC_Os12g37520
OsAffx.7821.1.S1_x_at--968--9311Chr12:22994690..22994714 (25 bp)
TCGACCAAACCTCAAGATACGTGGC
LOC_Os12g37520
OsAffx.7821.1.S1_x_at--35--4051Chr12:22994689..22994713 (25 bp)
CGACCAAACCTCAAGATACGTGGCG
LOC_Os12g37520
OsAffx.7821.1.S1_x_at--214--1711Chr12:22994687..22994711 (25 bp)
ACCAAACCTCAAGATACGTGGCGTA
LOC_Os12g37520
Target Sequence 
GGGAGATCCAACCTGACCGGAGTATGTCTCCCGACGAGATTGAAACCATCGTCATCAACAATTCGATCTCTCAAGATCGA
CCAAACCTCAAGATACGTGGCGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7821.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis