Browse Element(s) Details


OsAffx.7860.1.S1_at

Description tigr:9640.m04126
TID=OsAffx.7860.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Lipase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4201011/11Lipase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41956Os.12400.1.S1_x_at9/1112+25983062..25987159Galactosyltransferase family, putative, expressed
LOC_Os12g41962Os.35155.1.S1_at11/1112+25988161..25992511expressed protein
LOC_Os12g41970OsAffx.32147.1.S1_at11/1112+25992801..25993931Lipase family protein
LOC_Os12g41980OsAffx.32148.1.S1_at11/1112+26000435..26001631Lipase family protein
LOC_Os12g41990OsAffx.21485.1.S1_at5/1112+26005139..26006857transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g42000OsAffx.32149.3.S1_at11/1112+26010614..26011272hypothetical protein
LOC_Os12g42000Os.29072.1.S1_at2/1112+26010614..26011272hypothetical protein
LOC_Os12g42010OsAffx.7860.1.S1_at11/1112+26012052..26013206Lipase family protein
LOC_Os12g42020Os.54625.1.S1_at11/1112+26021615..26023374Serine/threonine protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004806molecular_functiontriacylglycerol lipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7860.1.S1_at--359--9671Chr12:26012602..26012626 (25 bp)
TCAGCGCACAGGAGCAGGTCGTCGA
LOC_Os12g42010
OsAffx.7860.1.S1_at--600--7391Chr12:26012573..26012597 (25 bp)
GTGAGGCGATTGGTCGGCCATTTCC
LOC_Os12g42010
OsAffx.7860.1.S1_at--552--3551Chr12:26012555..26012579 (25 bp)
CATTTCCGGCGAGAAGATCCCGGCG
LOC_Os12g42010
OsAffx.7860.1.S1_at--222--1911Chr12:26012350..26012374 (25 bp)
ACGTGGTGTCCCTCGTCGTCAAGCA
LOC_Os12g42010
OsAffx.7860.1.S1_at--131--9731Chr12:26012332..26012356 (25 bp)
TCAAGCAGGACTTGGTGCCGCGGCT
LOC_Os12g42010
OsAffx.7860.1.S1_at--693--1771Chr12:26012296..26012320 (25 bp)
ACCGGTACGTGCAGGTCACCGAGAA
LOC_Os12g42010
OsAffx.7860.1.S1_at--319--7832Chr12:26012283..26012307 (25 bp)
GGTCACCGAGAAAGTCGTCGAGCTC
LOC_Os12g42010
OsAffx.7860.1.S1_at--62--8731Chr12:26012227..26012251 (25 bp)
TGTCGGCGTCGCACAGCCTGGAACA
LOC_Os12g42010
OsAffx.7860.1.S1_at--127--2171Chr12:26012215..26012239 (25 bp)
ACAGCCTGGAACAGTACCTGCACCT
LOC_Os12g42010
OsAffx.7860.1.S1_at--993--9032Chr12:26012197..26012221 (25 bp)
TGCACCTGTTCAGGCGCCTGTGCGA
LOC_Os12g42010
OsAffx.7860.1.S1_at--715--1851Chr12:26012173..26012197 (25 bp)
ACGACGACGGGCAAGCCTTCGCGGC
LOC_Os12g42010
Target Sequence 
TCAGCGCACAGGAGCAGGTCGTCGAGGAGGTGAGGCGATTGGTCGGCCATTTCCGGCGAGAAGATCCCGGCGTCGGCGTC
CGCGTGACCATGGCGGGGCACAGCCTCGGCGGCGCGCTCGCCCTGATGGCCGCGCACGACGTCGCGGCGGCGCTGGCCGA
CGACGACGTCCCCGTCCGCGCCGTGACCTTCGGCGCGCCGCGCGTCGGCGACGGGGCGTTCCGCGACGCCCTGATCAAGG
GCCGCCACGTCGACGTGGTGTCCCTCGTCGTCAAGCAGGACTTGGTGCCGCGGCTGCCGCCGGGCCACCGGTACGTGCAG
GTCACCGAGAAAGTCGTCGAGCTCGTCGTCGACGACGCCGCCGTCGCCATGTCGCTGTCGGCGTCGCACAGCCTGGAACA
GTACCTGCACCTGTTCAGGCGCCTGTGCGACGACGACGGGCAAGCCTTCGCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7860.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis