Browse Element(s) Details


OsAffx.7864.1.S1_at

Description tigr:9640.m04169
TID=OsAffx.7864.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to dnaj protein homolog 2. (leek
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4244011/11DnaJ protein homolog 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42410OsAffx.32156.1.S1_at11/1112+26325237..26326071hypothetical protein
LOC_Os12g42420Os.21335.1.A1_at10/1112+26329666..26331819expressed protein
LOC_Os12g42430Os.47920.1.S1_at11/1112+26335640..26341045IQ calmodulin-binding motif family protein, expressed
LOC_Os12g42430Os.41841.1.S1_at1/1112+26335640..26341045IQ calmodulin-binding motif family protein, expressed
LOC_Os12g42440OsAffx.7864.1.S1_at11/1112+26344262..26346243DnaJ protein homolog 2, putative, expressed
LOC_Os12g42450NANA12+26348073..26350606retrotransposon protein, putative, unclassified
LOC_Os12g42460OsAffx.25357.1.S1_at1/1112+26351256..26353811hypothetical protein
LOC_Os12g42470OsAffx.32157.1.S1_at11/1112+26354035..26354659hypothetical protein
LOC_Os12g42480OsAffx.7866.1.S1_x_at11/1112+26358002..26358809hypothetical protein
LOC_Os12g42490OsAffx.20089.1.S1_at11/1112+26365472..26367097hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7864.1.S1_at--348--2731Chr12:26345731..26345755 (25 bp)
AAGCACGGCAAGTTCACGAGGAAAG
LOC_Os12g42440
OsAffx.7864.1.S1_at--826--1871Chr12:26345746..26345770 (25 bp)
ACGAGGAAAGGCGACGACCTCGTCT
LOC_Os12g42440
OsAffx.7864.1.S1_at--273--9411Chr12:26345765..26345789 (25 bp)
TCGTCTACGAGCACGAGCTGTCGCT
LOC_Os12g42440
OsAffx.7864.1.S1_at--901--8691Chr12:26345801..26345825 (25 bp)
TGTGCGGGTTCCAGTTCGTGATCAC
LOC_Os12g42440
OsAffx.7864.1.S1_at--471--1231Chr12:26345813..26345837 (25 bp)
AGTTCGTGATCACCCACCTCGACGG
LOC_Os12g42440
OsAffx.7864.1.S1_at--624--411Chr12:26345875..26345899 (25 bp)
ATCAGGCCGGGCCAGCTCAAGGCCA
LOC_Os12g42440
OsAffx.7864.1.S1_at--692--3331Chr12:26345923..26345947 (25 bp)
CACGGCATGCCGTTCGCCAAGGGCA
LOC_Os12g42440
OsAffx.7864.1.S1_at--1113--9171Chr12:26345930..26345954 (25 bp)
TGCCGTTCGCCAAGGGCACGCTCTA
LOC_Os12g42440
OsAffx.7864.1.S1_at--1011--1291Chr12:26346113..26346137 (25 bp)
AGATGAAGCTCAACGCGAAGGGCGA
LOC_Os12g42440
OsAffx.7864.1.S1_at--969--1571Chr12:26346119..26346143 (25 bp)
AGCTCAACGCGAAGGGCGAGCAGTC
LOC_Os12g42440
OsAffx.7864.1.S1_at--948--4611Chr12:26346176..26346200 (25 bp)
GCGAGGATGAATACGTGCACGTGCA
LOC_Os12g42440
Target Sequence 
AAGCACGGCAAGTTCACGAGGAAAGGCGACGACCTCGTCTACGAGCACGAGCTGTCGCTGGCAGAGGCGCTGTGCGGGTT
CCAGTTCGTGATCACCCACCTCGACGGCCGGCGGCTGCTGGTCACCTCCGGCGCCGGCGAGGTGATCAGGCCGGGCCAGC
TCAAGGCCATCGACGGCGAGGGCATGCCAGTGCACGGCATGCCGTTCGCCAAGGGCACGCTCTACGTCGCCTTCCGCGTC
GCGTTCCCGGGCACGATGACCCCGGCGCTCCGCGACGCCGTCGGCTCCGCGTTCCCCGCGGCCACGAAGGCGGCGGCCGT
GGAGGACGGCGGCGGGTGCGAGGAGACGACGACGACGACGCGGGACGTCGGAGGGGAAGAGGAGATGAAGCTCAACGCGA
AGGGCGAGCAGTCGCCGACGACGCGGATGGAGCACGGCGCCGGCGGCGAGGATGAATACGTGCACGTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7864.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis