Browse Element(s) Details


OsAffx.7869.1.S1_at

Description tigr:9640.m04181
TID=OsAffx.7869.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4256010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42500NANA12+26372110..26372953retrotransposon protein, putative, unclassified
LOC_Os12g42510OsAffx.32158.1.S1_x_at11/1112+26380372..26381214hypothetical protein
LOC_Os12g42510OsAffx.32158.1.S1_at11/1112+26380372..26381214hypothetical protein
LOC_Os12g42520OsAffx.32159.1.S1_at11/1112+26382328..26385998Leucine Rich Repeat family protein
LOC_Os12g42530OsAffx.7867.1.S1_at11/1112+26387110..26388414hypothetical protein
LOC_Os12g42540NANA12+26391264..26391518RING-H2 finger protein ATL2I, putative
LOC_Os12g42550Os.11845.1.S1_a_at11/1112+26391717..26396477Methyl-CpG binding domain containing protein, expressed
LOC_Os12g42560OsAffx.7869.1.S1_at10/1112+26396592..26398755hypothetical protein
LOC_Os12g42570Os.4813.1.S1_at11/1112+26399748..26404391expressed protein
LOC_Os12g42580NANA12+26415446..26415991transposon protein, putative, unclassified, expressed
LOC_Os12g42590OsAffx.20091.1.S1_at8/1112+26418379..26420581hypothetical protein
LOC_Os12g42600OsAffx.32160.1.S1_at11/1112+26421369..26427732Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os12g42600Os.24076.1.S1_at1/1112+26421369..26427732Ubiquitin carboxyl-terminal hydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7869.1.S1_at--305--7491NONE
GTGGGTGGCTGGTTAACTCTACTCA
NONE
OsAffx.7869.1.S1_at--127--8591Chr12:26397556..26397578 (23 bp)
TGGTTAACTCTACTCACACTGACAC
LOC_Os12g42560
OsAffx.7869.1.S1_at--80--3311Chr12:26397568..26397592 (25 bp)
CACACTGACACTGCTTGAAGGAAAT
LOC_Os12g42560
OsAffx.7869.1.S1_at--353--9731Chr12:26397597..26398086 (25 bp)
TAATTTCTGGACAAGTAGTCACAAG
LOC_Os12g42560
OsAffx.7869.1.S1_at--34--1431Chr12:26398085..26398109 (25 bp)
AGAAAGCTAGGGTTCCTCATGTCTC
LOC_Os12g42560
OsAffx.7869.1.S1_at--408--1071Chr12:26398093..26398117 (25 bp)
AGGGTTCCTCATGTCTCTATTGAAT
LOC_Os12g42560
OsAffx.7869.1.S1_at--681--7151Chr12:26398105..26398129 (25 bp)
GTCTCTATTGAATTGTCCTACCAGC
LOC_Os12g42560
OsAffx.7869.1.S1_at--555--7251Chr12:26398119..26398143 (25 bp)
GTCCTACCAGCTACAATTCAATCTA
LOC_Os12g42560
OsAffx.7869.1.S1_at--419--2231Chr12:26398131..26398155 (25 bp)
ACAATTCAATCTATGGTTATGCAAA
LOC_Os12g42560
OsAffx.7869.1.S1_at--402--2311Chr12:26398153..26398177 (25 bp)
AAAGGCTGATGCTGCGTCACATTCA
LOC_Os12g42560
OsAffx.7869.1.S1_at--500--7091Chr12:26398168..26398192 (25 bp)
GTCACATTCAGTCCCTGTACTGATA
LOC_Os12g42560
Target Sequence 
GTGGGTGGCTGGTTAACTCTACTCACACTGACACTGCTTGAAGGAAATACACTAATTTCTGGACAAGTAGTCACAAGAAA
GCTAGGGTTCCTCATGTCTCTATTGAATTGTCCTACCAGCTACAATTCAATCTATGGTTATGCAAAGGCTGATGCTGCGT
CACATTCAGTCCCTGTACTGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7869.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis