Browse Element(s) Details


OsAffx.7886.1.S1_at

Description tigr:9640.m04363
TID=OsAffx.7886.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4427011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g44200NANA12+27384508..27388587retrotransposon protein, putative, unclassified
LOC_Os12g44210Os.56885.1.S1_at11/1112+27388895..27390394Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g44210OsAffx.32185.1.S1_s_at11/1112+27388895..27390394Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g44210OsAffx.32185.1.S1_x_at2/1112+27388895..27390394Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g44210OsAffx.25760.1.S1_x_at1/1112+27388895..27390394Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g44220OsAffx.32185.1.S1_x_at11/1112+27392907..27393875Cell Division Protein AAA ATPase family, putative
LOC_Os12g44220OsAffx.32185.1.S1_s_at11/1112+27392907..27393875Cell Division Protein AAA ATPase family, putative
LOC_Os12g44230Os.5853.2.S1_x_at11/1112+27396595..27401472HIPL1 protein precursor, putative, expressed
LOC_Os12g44230Os.5853.1.S1_at11/1112+27396595..27401472HIPL1 protein precursor, putative, expressed
LOC_Os12g44240Os.15359.1.S1_at11/1112+27402712..27404908BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein, putative, expressed
LOC_Os12g44250OsAffx.32186.1.S1_at11/1112+27405565..27407849Synaptobrevin family protein, expressed
LOC_Os12g44250OsAffx.1407.1.S1_at3/1112+27405565..27407849Synaptobrevin family protein, expressed
LOC_Os12g44250Os.55414.1.S1_at2/1112+27405565..27407849Synaptobrevin family protein, expressed
LOC_Os12g44260OsAffx.20114.1.S1_x_at11/1112+27408160..27408829DnaJ domain containing protein
LOC_Os12g44260OsAffx.20114.1.S1_at11/1112+27408160..27408829DnaJ domain containing protein
LOC_Os12g44270OsAffx.7886.1.S1_at11/1112+27410275..27410646hypothetical protein
LOC_Os12g44280NANA12+27413047..27413997hypothetical protein
LOC_Os12g44290OsAffx.20116.1.S1_at11/1112+27417687..27419435Cytochrome P450 family protein, expressed
LOC_Os12g44300OsAffx.32187.1.S1_s_at11/1112+27428036..27430667Sodium/hydrogen exchanger family protein, expressed
LOC_Os12g44300Os.10071.1.S1_at6/1112+27428036..27430667Sodium/hydrogen exchanger family protein, expressed
LOC_Os12g44310Os.10598.1.S1_at10/1112+27431232..274384309,10-9',10' carotenoid cleavage dioxygenase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7886.1.S1_at--465--9571Chr12:27410587..27410611 (25 bp)
TCTTCTTCTACTTGTAGTGGTGCTC
LOC_Os12g44270
OsAffx.7886.1.S1_at--319--9531Chr12:27410581..27410605 (25 bp)
TCTACTTGTAGTGGTGCTCATGCTA
LOC_Os12g44270
OsAffx.7886.1.S1_at--955--10071Chr12:27410573..27410597 (25 bp)
TAGTGGTGCTCATGCTACTTAATGT
LOC_Os12g44270
OsAffx.7886.1.S1_at--905--7771Chr12:27410569..27410593 (25 bp)
GGTGCTCATGCTACTTAATGTATCA
LOC_Os12g44270
OsAffx.7886.1.S1_at--387--9771Chr12:27410554..27410578 (25 bp)
TAATGTATCATGTGAGGCCGCTAGA
LOC_Os12g44270
OsAffx.7886.1.S1_at--409--8771Chr12:27410551..27410575 (25 bp)
TGTATCATGTGAGGCCGCTAGAGGC
LOC_Os12g44270
OsAffx.7886.1.S1_at--330--3471Chr12:27410514..27410538 (25 bp)
CAGGGCGCCACAACCATGGCGAAGG
LOC_Os12g44270
OsAffx.7886.1.S1_at--690--9731Chr12:27410462..27410486 (25 bp)
TCAATGACCACAAGACCTTTCTGCC
LOC_Os12g44270
OsAffx.7886.1.S1_at--216--3011Chr12:27410460..27410484 (25 bp)
AATGACCACAAGACCTTTCTGCCGC
LOC_Os12g44270
OsAffx.7886.1.S1_at--263--10311Chr12:27410445..27410469 (25 bp)
TTTCTGCCGCCAGTGCCAGGCATGG
LOC_Os12g44270
OsAffx.7886.1.S1_at--230--3651Chr12:27410401..27410425 (25 bp)
CTTCGCTGGTATGGGAGGTCCTCTC
LOC_Os12g44270
Target Sequence 
TCTTCTTCTACTTGTAGTGGTGCTCATGCTACTTAATGTATCATGTGAGGCCGCTAGAGGCATGCCCGCGCCGCAGGGCG
CCACAACCATGGCGAAGGCCATGGAGGCCGGCGGCGGCGGGGGTCTCAATGACCACAAGACCTTTCTGCCGCCAGTGCCA
GGCATGGGCGGCGGCGGTGTTGGAGGCTTCGCTGGTATGGGAGGTCCTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7886.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis