Browse Element(s) Details


OsAffx.7932.1.S1_x_at

Description tigr:9638.m03575
TID=OsAffx.7932.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3955010/11myb-like DNA-binding domain, SHAQKYF class family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39510Os.53336.1.S1_x_at11/1110+20775425..20779239expressed protein
LOC_Os10g39510Os.53336.1.S1_at11/1110+20775425..20779239expressed protein
LOC_Os10g39520Os.2653.1.S1_at11/1110+20779773..20784464MLO-like protein 10, putative, expressed
LOC_Os10g39530NANA10+20788585..20792933retrotransposon protein, putative, unclassified
LOC_Os10g39540Os.2657.1.S1_x_at11/1110+20796518..20800129Protein phosphatase 2C containing protein, expressed
LOC_Os10g39550OsAffx.7932.1.S1_x_at10/1110+20804073..20808581myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os10g39554NANA10+20813046..20813290NA
LOC_Os10g39560OsAffx.6916.1.S1_at11/1110+20814007..20817218Serine carboxypeptidase family protein
LOC_Os10g39570OsAffx.30727.1.S1_at8/1110+20824528..20826500expressed protein
LOC_Os10g39590OsAffx.20160.1.S1_x_at11/1110+20833157..20833402Nedd8-like protein RUB3 precursor, putative, expressed
LOC_Os10g39590OsAffx.20160.1.S1_at11/1110+20833157..20833402Nedd8-like protein RUB3 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7932.1.S1_x_at--781--4151Chr10:20804941..20804965 (25 bp)
CGCCAAGGCTGCTGGGCCTCGTCGT
LOC_Os10g39550
OsAffx.7932.1.S1_x_at--305--4473Chr08:20027935..20027957 (22 bp)
GCCTCGTCGTGATGGCGACGACGAC
NONE
OsAffx.7932.1.S1_x_at--561--4091Chr10:20804908..20804932 (25 bp)
CGACGACAAGGCGTGGCTCTCGCGA
LOC_Os10g39550
OsAffx.7932.1.S1_x_at--290--4811NONE
GCTCTCGCGAGGAGCACAAGGCGAC
NONE
OsAffx.7932.1.S1_x_at--968--3371Chr10:20804347..20804371 (25 bp)
CACCACCGGAGAACGGCGCGATCAG
LOC_Os10g39550
OsAffx.7932.1.S1_x_at--292--2571Chr10:20804336..20804360 (25 bp)
AACGGCGCGATCAGGCACGGGAGGA
LOC_Os10g39550
OsAffx.7932.1.S1_x_at--1083--5771Chr10:20804258..20804282 (25 bp)
GACGAGCTCTCGCTGTCACTGACGC
LOC_Os10g39550
OsAffx.7932.1.S1_x_at--120--9351Chr10:20804249..20804273 (25 bp)
TCGCTGTCACTGACGCTGGACTCGG
LOC_Os10g39550
OsAffx.7932.1.S1_x_at--1114--1511Chr10:20804171..20804195 (25 bp)
AGCAGCAGCAACTGGCTGATCTCGT
LOC_Os10g39550
OsAffx.7932.1.S1_x_at--72--1531Chr10:20804168..20804192 (25 bp)
AGCAGCAACTGGCTGATCTCGTCGC
LOC_Os10g39550
OsAffx.7932.1.S1_x_at--131--3931Chr10:20804105..20804129 (25 bp)
CGGCGGAGTACTCCGGCCATGCTTA
LOC_Os10g39550
Target Sequence 
CGCCAAGGCTGCTGGGCCTCGTCGTGATGGCGACGACGACAAGGCGTGGCTCTCGCGAGGAGCACAAGGCGACGCCACCA
CCGGAGAACGGCGCGATCAGGCACGGGAGGAAGGCCAGGCGTACGACGGCGGCGGCAGAGGAGGAGGAGCGTGACGGCGA
CGGCGACGAGCTCTCGCTGTCACTGACGCTGGACTCGGGGCTCAGTTGCCGGAGCAGCGGCGGCGCCGGCGCATACTGCT
GCAGCGAAGGCAGCAGCAGCAACTGGCTGATCTCGTCGCCGTCGTCGACGACGAGCCTCGTCGCCGGTGGCTGCTCGCGG
CGGAGTACTCCGGCCATGCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7932.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis