Browse Element(s) Details


OsAffx.7960.1.S1_at

Description tigr:9638.m03419
TID=OsAffx.7960.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3807011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g38020Os.23271.2.A1_x_at11/1110+20031264..20035426expressed protein
LOC_Os10g38020Os.23271.1.S1_at1/1110+20031264..20035426expressed protein
LOC_Os10g38030Os.21030.1.S1_at11/1110+20035645..20038586Per1-like family protein, expressed
LOC_Os10g38040Os.51639.1.S1_x_at11/1110+20044569..20045771LysM domain containing protein, expressed
LOC_Os10g38040Os.11882.1.S1_at11/1110+20044569..20045771LysM domain containing protein, expressed
LOC_Os10g38060Os.9389.2.S2_at11/1110+20047348..20056413Phospholipase D beta 1, putative, expressed
LOC_Os10g38060Os.9389.2.S1_s_at11/1110+20047348..20056413Phospholipase D beta 1, putative, expressed
LOC_Os10g38060OsAffx.30709.1.S1_x_at11/1110+20047348..20056413Phospholipase D beta 1, putative, expressed
LOC_Os10g38060Os.9389.2.S2_a_at11/1110+20047348..20056413Phospholipase D beta 1, putative, expressed
LOC_Os10g38050Os.9389.1.A1_a_at11/1110+20047512..20049888HOTHEAD protein precursor, putative, expressed
LOC_Os10g38050OsAffx.12714.1.S1_x_at2/1110+20047512..20049888HOTHEAD protein precursor, putative, expressed
LOC_Os10g38070OsAffx.7960.1.S1_at11/1110+20058201..20059181expressed protein
LOC_Os10g38080Os.6363.1.S1_at11/1110+20059961..20062501Subtilisin N-terminal Region family protein, expressed
LOC_Os10g38090Os.39214.1.S1_at11/1110+20065112..20069616Cytochrome P450 family protein, expressed
LOC_Os10g38094NANA10+20070971..20071742hypothetical protein
LOC_Os10g38100OsAffx.21993.2.S1_at11/1110+20077727..20078317hypothetical protein
LOC_Os10g38100OsAffx.21993.2.S1_x_at11/1110+20077727..20078317hypothetical protein
LOC_Os10g38110Os.10360.1.S1_at11/1110+20082346..20086498Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7960.1.S1_at--465--5491Chr10:20058651..20058675 (25 bp)
GAACATCGAACATGGTGGCCTCACA
LOC_Os10g38070
OsAffx.7960.1.S1_at--265--7731Chr10:20058638..20058662 (25 bp)
GGTGGCCTCACAAAAGCAGCAGATA
LOC_Os10g38070
OsAffx.7960.1.S1_at--471--1251Chr10:20058618..20058642 (25 bp)
AGATATTTTTCCATCCGCTACTATT
LOC_Os10g38070
OsAffx.7960.1.S1_at--984--8031Chr10:20058571..20058595 (25 bp)
GGAGTACATGTCTAGCTGAAAGCAA
LOC_Os10g38070
OsAffx.7960.1.S1_at--222--1291Chr10:20058490..20058514 (25 bp)
AGATCGTAGTACTTCCTGCTACTAT
LOC_Os10g38070
OsAffx.7960.1.S1_at--955--1531Chr10:20058414..20058438 (25 bp)
AGCATTCAGGCAAAGCAACCTTCGG
LOC_Os10g38070
OsAffx.7960.1.S1_at--494--3251Chr10:20058399..20058423 (25 bp)
CAACCTTCGGATGCTGATGACAGAT
LOC_Os10g38070
OsAffx.7960.1.S1_at--182--3031Chr10:20058369..20058393 (25 bp)
AATGCCATCAATTATACTGACCGGG
LOC_Os10g38070
OsAffx.7960.1.S1_at--438--8311Chr10:20058316..20058340 (25 bp)
GGCTATCGCAAGCTATCATCGTGTG
LOC_Os10g38070
OsAffx.7960.1.S1_at--107--511Chr10:20058299..20058323 (25 bp)
ATCGTGTGCACCGTGCAGTGCAGAC
LOC_Os10g38070
OsAffx.7960.1.S1_at--42--2251Chr10:20058274..20058298 (25 bp)
AAATTGTTCCAGGTCGCATTGATCA
LOC_Os10g38070
Target Sequence 
GAACATCGAACATGGTGGCCTCACAAAAGCAGCAGATATTTTTCCATCCGCTACTATTCGGATCTTCAAGAATTCCAGAT
GGAGTACATGTCTAGCTGAAAGCAAGCAACACACATCAGCAAAAGAGATTGATAAACTGAAAAGGGGAAGGATCAGATTC
CAGATCGTAGTACTTCCTGCTACTATCCTACAGTACTATCTTCTACAAGCAAGGATCATGGAGAAAAGCTTGATGAAAGC
ATTCAGGCAAAGCAACCTTCGGATGCTGATGACAGATGCCAAAATGCCATCAATTATACTGACCGGGGACCCCAGATCCA
GCTTGCCGATTCGGCGGCTATCGCAAGCTATCATCGTGTGCACCGTGCAGTGCAGACAAATTGTTCCAGGTCGCATTGAT
CA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7960.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis