Browse Element(s) Details


OsAffx.8000.1.S1_x_at

Description gb:NM_197113.1
DB_XREF= gi:37535585
TID=OsAffx.8000.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (P0031G09.4), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g284201/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g28390OsAffx.21330.1.S1_at1/1111+15840149..15841075hypothetical protein
LOC_Os11g28400NANA11+15842208..15847228retrotransposon protein, putative, unclassified
LOC_Os11g28410Os.7544.1.S1_at9/1111+15847738..15858186retrotransposon protein, putative, unclassified
LOC_Os11g28410Os.5217.1.S1_at1/1111+15847738..15858186retrotransposon protein, putative, unclassified
LOC_Os11g28420Os.52253.1.S1_at11/1111+15864770..15865563expressed protein
LOC_Os11g28420OsAffx.8000.1.S1_x_at1/1111+15864770..15865563expressed protein
LOC_Os11g28430OsAffx.31183.1.S1_at10/1111+15867195..15869881hypothetical protein
LOC_Os11g28430OsAffx.18697.2.A1_at7/1111+15867195..15869881hypothetical protein
LOC_Os11g28440OsAffx.19052.1.S1_at10/1111+15873308..15874748hypothetical protein
LOC_Os11g28450OsAffx.19053.1.S1_at11/1111+15876188..15876945hypothetical protein
LOC_Os11g28460OsAffx.8934.1.S1_x_at1/1111+15877993..15878668hypothetical protein
LOC_Os11g28470OsAffx.19055.1.S1_at11/1111+15883922..15885418hypothetical protein
LOC_Os11g28480OsAffx.31184.1.S1_at10/1111+15886678..15893723expressed protein
LOC_Os11g28480Os.3448.1.S1_a_at1/1111+15886678..15893723expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8000.1.S1_x_at--712--5611NONE
GACAACGACCTTCACGATGCCGCGA
NONE
OsAffx.8000.1.S1_x_at--106--9671NONE
TCACGATGCCGCGAAGCTACGGATC
NONE
OsAffx.8000.1.S1_x_at--1128--591NONE
ATGCCGCGAAGCTACGGATCCATCG
NONE
OsAffx.8000.1.S1_x_at--458--4591Chr12:7760734..7760805 (25 bp)
GCGAAGCTACGGATCCATCGGCTCC
NONE
OsAffx.8000.1.S1_x_at--101--5791Chr10:18256351..18256375 (25 bp)
GACGACGACAATGACCGCGACACCG
NONE
OsAffx.8000.1.S1_x_at--641--1791Chr10:18256275..18256299 (25 bp)
ACCGATGGTGCCGACGCGACGATGA
NONE
OsAffx.8000.1.S1_x_at--1046--1851Chr10:18256224..18256248 (25 bp)
ACGACGCGACGATGGCACCAACGCT
NONE
OsAffx.8000.1.S1_x_at--612--5071Chr10:18256104..18256234 (25 bp)
GCACCAACGCTTGCGGGTGAATCTA
NONE
OsAffx.8000.1.S1_x_at--1077--3052Chr11:15864936..15864956 (21 bp)
AATCTACCGCCTGCGAAGATGTCGT
LOC_Os11g28420
OsAffx.8000.1.S1_x_at--381--9151Chr10:18256074..18256098 (25 bp)
TGCGAAGATGTCGTCCACCTGCAAA
NONE
OsAffx.8000.1.S1_x_at--399--4111Chr10:18256072..18256096 (25 bp)
CGAAGATGTCGTCCACCTGCAAAAA
NONE
Target Sequence 
GACAACGACCTTCACGATGCCGCGAAGCTACGGATCCATCGGCTCCCCTCCTTCCCGCCTTCGCCGCCGACTCCCCTTCT
CGCCGTCGGCTCCGTCCTCCCCTCCTCCACCGCCGGCTCCCCTCCTCGTCGTCGGCTCCCTCCTCCCCGCCTCTGCCGCC
GGCTCCTTTCTTGCCACCGGCTTCCTCCTCGACGACGACAATGACCGCGACACCGCCTCTGCTGCCGGCTCCCTCCTCGC
CGTCGGCTCCCTCCTCCCTCCTCCCCACCGATGGTGCCGACGCGACGATGACGACGACGACAACGACTGCCACCACCACG
ACGCGACGATGGCACCAACGCTTGCGGGTGAATCTACCGCCTGCGAAGATGTCGTCCACCTGCAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8000.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis