Browse Element(s) Details


OsAffx.8030.1.S1_at

Description tigr:9638.m02898
TID=OsAffx.8030.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3320010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33170Os.17250.1.S1_at11/1110+17045068..17049651POT family protein, expressed
LOC_Os10g33170Os.17250.1.S1_x_at11/1110+17045068..17049651POT family protein, expressed
LOC_Os10g33190Os.31845.2.S1_x_at1/1110+17060331..17066649expressed protein
LOC_Os10g33200OsAffx.8030.1.S1_at10/1110+17070572..17071409hypothetical protein
LOC_Os10g33204NANA10+17082023..17082526hypothetical protein
LOC_Os10g33210Os.46447.1.S1_at11/1110+17086216..17091424POT family protein, expressed
LOC_Os10g33220OsAffx.22940.1.S1_s_at11/1110+17093442..17100793Transposable element protein, putative, MuDR
LOC_Os10g33220OsAffx.22940.5.S1_x_at10/1110+17093442..17100793Transposable element protein, putative, MuDR
LOC_Os10g33220Os.35344.3.S1_x_at9/1110+17093442..17100793Transposable element protein, putative, MuDR
LOC_Os10g33220OsAffx.22940.5.S1_at8/1110+17093442..17100793Transposable element protein, putative, MuDR
LOC_Os10g33220OsAffx.22940.2.S1_at8/1110+17093442..17100793Transposable element protein, putative, MuDR
LOC_Os10g33220Os.35344.18.S1_x_at7/1110+17093442..17100793Transposable element protein, putative, MuDR
LOC_Os10g33220OsAffx.22940.2.S1_s_at6/1110+17093442..17100793Transposable element protein, putative, MuDR
LOC_Os10g33220OsAffx.22940.3.S1_x_at6/1110+17093442..17100793Transposable element protein, putative, MuDR
LOC_Os10g33220OsAffx.31552.2.S1_at1/1110+17093442..17100793Transposable element protein, putative, MuDR

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8030.1.S1_at--483--4691Chr10:17070429..17070596 (25 bp)
GCGGCGAGAGGTGGACCCTCGTCGT
NONE
OsAffx.8030.1.S1_at--741--4011Chr10:17070594..17070618 (25 bp)
CGTCGTCTGCTCGTGGTGTATGGCT
LOC_Os10g33200
OsAffx.8030.1.S1_at--220--9411Chr10:17070596..17070620 (25 bp)
TCGTCTGCTCGTGGTGTATGGCTCA
LOC_Os10g33200
OsAffx.8030.1.S1_at--493--7431Chr10:17070609..17070631 (23 bp)
GTGTATGGCTCATGGCAGCAGGTCA
LOC_Os10g33200
OsAffx.8030.1.S1_at--1024--8751Chr10:17070610..17070631 (22 bp)
TGTATGGCTCATGGCAGCAGGTCAC
LOC_Os10g33200
OsAffx.8030.1.S1_at--978--10091Chr10:17070612..17070769 (25 bp)
TATGGCTCATGGCAGCAGGTCACCG
LOC_Os10g33200
OsAffx.8030.1.S1_at--568--8491Chr10:17070614..17070771 (25 bp)
TGGCTCATGGCAGCAGGTCACCGAA
LOC_Os10g33200
OsAffx.8030.1.S1_at--270--4831Chr10:17070616..17070773 (25 bp)
GCTCATGGCAGCAGGTCACCGAAGC
LOC_Os10g33200
OsAffx.8030.1.S1_at--629--9631Chr10:17070618..17070775 (25 bp)
TCATGGCAGCAGGTCACCGAAGCGG
LOC_Os10g33200
OsAffx.8030.1.S1_at--887--3491Chr10:17070619..17070776 (25 bp)
CATGGCAGCAGGTCACCGAAGCGGC
LOC_Os10g33200
OsAffx.8030.1.S1_at--976--4131Chr10:17070767..17070791 (25 bp)
CCGAAGCGGCGTGGCCCAACTCCGG
LOC_Os10g33200
Target Sequence 
GCGGCGAGAGGTGGACCCTCGTCGTCGTCTGCTCGTGGTGTATGGCTCATGGCAGCAGGTCACCGAAGCGGCGTGGCCCA
ACTCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8030.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis