Browse Element(s) Details


OsAffx.8070.1.S1_x_at

Description gb:NM_190354.1
DB_XREF= gi:34907791
GEN=P0703B11.16
TID=OsAffx.8070.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0703B11.16 (P0703B11.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6059011/11transposon protein, putative, Pong sub-class
LOC_Os10g311208/11transposon protein, putative, Pong sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60520OsAffx.21781.1.S1_at11/111+35323641..35330075WRKY DNA binding domain containing protein
LOC_Os01g60530Os.8248.2.S1_x_at11/111+35330430..35332210transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g60530Os.8248.1.S1_x_at10/111+35330430..35332210transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g60530Os.8248.1.S1_at7/111+35330430..35332210transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g60540OsAffx.21780.1.S1_at11/111+35335715..35337947WRKY DNA binding domain containing protein
LOC_Os01g60549NANA1+35339515..35340129retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g60560OsAffx.21779.1.S1_at11/111+35343151..35344696retrotransposon protein, putative, unclassified
LOC_Os01g60569NANA1+35347231..35347755retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g60580OsAffx.21778.2.S1_x_at4/111+35351155..35352003transposon protein, putative, Pong sub-class
LOC_Os01g60590OsAffx.8070.1.S1_x_at11/111+35352452..35354519transposon protein, putative, Pong sub-class
LOC_Os01g60600OsAffx.9584.1.S1_at11/111+35359935..35362156WRKY DNA binding domain containing protein, expressed
LOC_Os01g60600OsAffx.9584.1.S1_x_at11/111+35359935..35362156WRKY DNA binding domain containing protein, expressed
LOC_Os01g60610NANA1+35364534..35367750retrotransposon protein, putative, unclassified
LOC_Os01g60620NANA1+35368373..35374602retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8070.1.S1_x_at--458--813Chr10:21894044..21894068 (25 bp)
ATGGGTGGGATTTTTCTGCGCCTCC
NONE
OsAffx.8070.1.S1_x_at--143--9173Chr10:21894060..21894084 (25 bp)
TGCGCCTCCTGGAAGAAGGCTGCAT
NONE
OsAffx.8070.1.S1_x_at--725--6013Chr10:21894119..21894143 (25 bp)
GAGAGACTTTGCTAATCAGTTTTAT
NONE
OsAffx.8070.1.S1_x_at--257--5271Chr01:35352926..35352950 (25 bp)
GAATGACTATCCTAACGAAGGTCCA
LOC_Os01g60590
OsAffx.8070.1.S1_x_at--966--5313Chr10:21894162..21894186 (25 bp)
GAAGGTCCATTCACAGTTTTGCACT
NONE
OsAffx.8070.1.S1_x_at--915--6273Chr10:21894204..21894228 (25 bp)
GATGAACCCAAGTGGCATGCTGTTT
NONE
OsAffx.8070.1.S1_x_at--933--5513Chr10:21894240..21894264 (25 bp)
GAAAAGCCACACAAGCGGAGCTTGG
NONE
OsAffx.8070.1.S1_x_at--878--9693Chr10:21894422..21894446 (25 bp)
TCAAGCTGCAGCTAGCAAACGACAT
NONE
OsAffx.8070.1.S1_x_at--633--10072Chr10:21894457..21894481 (25 bp)
TAGGGACTCAGCACCGTATTTCAGA
NONE
OsAffx.8070.1.S1_x_at--594--6212Chr10:21894513..21894537 (25 bp)
GAGGCTGTCTTGACGGAATCATATC
NONE
OsAffx.8070.1.S1_x_at--404--2693Chr10:21894581..21894605 (25 bp)
AAGCTGAGCACGTGATGGGTCTCAA
NONE
Target Sequence 
ATGGGTGGGATTTTTCTGCGCCTCCTGGAAGAAGGCTGCATTAGTTTATACTAGTGGATATTCAGATGATCAGTTGAGAG
ACTTTGCTAATCAGTTTTATGTGAATGACTATCCTAACGAAGGTCCATTCACAGTTTTGCACTATTGGAAGGTTCTTCAT
GATGAACCCAAGTGGCATGCTGTTTTGGAGGAGCTTGAAAAGCCACACAAGCGGAGCTTGGATGATGGAAGTGACACACT
ATCACAAAAAGATATCGGAGAAAAGGAGCGTCCAATGGGGAGGAATGAAGCTAAGAAACAACGCAATGGCAAAGGCAAAG
GTAAAGGCAAGGATGATGATGACAGTTTACATGAAGATATGAAGAAGTACATGGATGTTCAAGCTGCAGCTAGCAAACGA
CATGAAGAGTTTTTAGGGACTCAGCACCGTATTTCAGATGCAAAAGTTGAAGTAGCAAGGCTTAGGAGAGAGGCTGTCTT
GACGGAATCATATCAAAAATTGATGAGCATGGACACTAGTCAAATGACTAATGAGATGAAAGCTGAGCACGTGATGGGTC
TCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8070.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis