Browse Element(s) Details


OsAffx.8071.1.S1_at

Description gb:NM_196748.1
DB_XREF= gi:37534855
TID=OsAffx.8071.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0076M18.2), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3107011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31040Os.7688.1.S1_at11/1110+15896022..15909454expressed protein
LOC_Os10g31040Os.7688.2.S1_x_at10/1110+15896022..15909454expressed protein
LOC_Os10g31050OsAffx.30619.1.S1_at11/1110+15910366..15913341hypothetical protein
LOC_Os10g31060NANA10+15916405..15917842transposon protein, putative, unclassified
LOC_Os10g31070OsAffx.8071.1.S1_at11/1110+15930117..15930680hypothetical protein
LOC_Os10g31080OsAffx.20300.1.S1_at10/1110+15931565..15940944retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g31080OsAffx.24861.1.S1_at8/1110+15931565..15940944retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g31090OsAffx.30620.1.S1_at10/1110+15942570..15943039hypothetical protein
LOC_Os10g31100OsAffx.18470.1.S1_at11/1110+15947642..15948010hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8071.1.S1_at--874--8911Chr10:15930621..15930645 (25 bp)
TGAGCTTGATGTCCCGCCTGCAGAA
LOC_Os10g31070
OsAffx.8071.1.S1_at--748--9031Chr10:15930603..15930627 (25 bp)
TGCAGAATCCGGACTCGGCCAAGAC
LOC_Os10g31070
OsAffx.8071.1.S1_at--68--2771Chr10:15930583..15930607 (25 bp)
AAGACGTGGCTGACGACGGAGTCAT
LOC_Os10g31070
OsAffx.8071.1.S1_at--397--4591Chr10:15930466..15930490 (25 bp)
GCGCACGCGAGAGGATAGCCCGACT
LOC_Os10g31070
OsAffx.8071.1.S1_at--63--6171Chr10:15930456..15930480 (25 bp)
GAGGATAGCCCGACTGGCACCGCTG
LOC_Os10g31070
OsAffx.8071.1.S1_at--904--10111Chr10:15930401..15930425 (25 bp)
TATGTTGGTGCTGCTGCCCAGTTGA
LOC_Os10g31070
OsAffx.8071.1.S1_at--355--8671Chr10:15930294..15930318 (25 bp)
TGTGGTCACGCCATGCCGTCGACCG
LOC_Os10g31070
OsAffx.8071.1.S1_at--688--9471Chr10:15930215..15930239 (25 bp)
TCTGAGGCCGCTGAGCCATTCTCAG
LOC_Os10g31070
OsAffx.8071.1.S1_at--244--8911Chr10:15930204..15930228 (25 bp)
TGAGCCATTCTCAGCGAAGTCAATG
LOC_Os10g31070
OsAffx.8071.1.S1_at--465--1231Chr10:15930160..15930184 (25 bp)
AGATAAAAGGGCAATCCGGGCATTT
LOC_Os10g31070
OsAffx.8071.1.S1_at--470--8216Chr10:15930848..15930872 (24 bp)
GGCAATCCGGGCATTTAGAAAAATG
NONE
Target Sequence 
TGAGCTTGATGTCCCGCCTGCAGAATCCGGACTCGGCCAAGACGTGGCTGACGACGGAGTCATCGAGGGCGGCCACGAGG
GAGTTGGAGACGGGGGGCTCGTCGGCGCACGCGGCCACCGGTGCTCTTCCTCCGATCCAACCACCTCTCCAGCTGGCGCA
CGCGAGAGGATAGCCCGACTGGCACCGCTGCCTGGCCACCGCACGCCGGTGCCTCTCCCCTATGTTGGTGCTGCTGCCCA
GTTGAGCTCCTCCTCCGCTCGGCTGCGCCCCGACACATCGGCACTGCTGTCAGCCGCCCGCCATCGAACTGGCCAGACCC
GCACCTCTGTGGTCACGCCATGCCGTCGACCGCCCTGGCCGCCAGTGTCACTGCACCACGTCGCGCCGACCTCGCCCCAC
TGCACCTCTGAGGCCGCTGAGCCATTCTCAGCGAAGTCAATGGGAAGGGAGAAAGAAGGAAAGATAAAAGGGCAATCCGG
GCATTTAGAAAAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8071.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis