Browse Element(s) Details


OsAffx.8078.1.S1_at

Description tigr:9638.m02640
TID=OsAffx.8078.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3070011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30670Os.52659.1.S1_at7/1110+15639281..15640872transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g30670Os.47371.1.S1_at4/1110+15639281..15640872transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g30680OsAffx.30613.1.S1_x_at11/1110+15647714..15651134hAT family dimerisation domain containing protein
LOC_Os10g30680OsAffx.30613.3.S1_at10/1110+15647714..15651134hAT family dimerisation domain containing protein
LOC_Os10g30680OsAffx.30613.3.S1_x_at10/1110+15647714..15651134hAT family dimerisation domain containing protein
LOC_Os10g30690OsAffx.8079.1.S1_at11/1110+15652941..15658420hypothetical protein
LOC_Os10g30690Os.53952.1.S1_at1/1110+15652941..15658420hypothetical protein
LOC_Os10g30690Os.8736.1.S1_at1/1110+15652941..15658420hypothetical protein
LOC_Os10g30700OsAffx.8078.1.S1_at11/1110+15660389..15661583hypothetical protein
LOC_Os10g30719OsAffx.18467.1.S1_s_at11/1110+15668228..15671424Myb-like DNA-binding domain containing protein, expressed
LOC_Os10g30719Os.46487.1.S1_at11/1110+15668228..15671424Myb-like DNA-binding domain containing protein, expressed
LOC_Os10g30740Os.35344.18.S1_x_at6/1110+15678546..15684596transposon protein, putative, Mutator sub-class
LOC_Os10g30740Os.35344.3.S1_x_at6/1110+15678546..15684596transposon protein, putative, Mutator sub-class
LOC_Os10g30740OsAffx.22940.5.S1_x_at2/1110+15678546..15684596transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8078.1.S1_at--209--591Chr10:15660592..15660616 (25 bp)
ATGCCCCGTTTACTTGGGACAGACG
LOC_Os10g30700
OsAffx.8078.1.S1_at--607--10331Chr10:15660584..15660608 (25 bp)
TTTACTTGGGACAGACGGCAGCGGC
LOC_Os10g30700
OsAffx.8078.1.S1_at--615--8251Chr10:15660568..15660592 (25 bp)
GGCAGCGGCGTCCTCGTTATGATCT
LOC_Os10g30700
OsAffx.8078.1.S1_at--628--4651Chr10:15660561..15660585 (25 bp)
GCGTCCTCGTTATGATCTTCATGGA
LOC_Os10g30700
OsAffx.8078.1.S1_at--241--3551Chr10:15660534..15660558 (25 bp)
CATCGTTTGAAGGTCCATTTCCTTT
LOC_Os10g30700
OsAffx.8078.1.S1_at--1109--9831Chr10:15660510..15660534 (25 bp)
TAAATATTTCTCCAGACGACCGTCC
LOC_Os10g30700
OsAffx.8078.1.S1_at--488--1391Chr10:15660497..15660521 (25 bp)
AGACGACCGTCCTCTTTGCGGTGGT
LOC_Os10g30700
OsAffx.8078.1.S1_at--241--10291Chr10:15660483..15660507 (25 bp)
TTTGCGGTGGTGCTTATGACTTTCA
LOC_Os10g30700
OsAffx.8078.1.S1_at--70--691Chr10:15660468..15660492 (25 bp)
ATGACTTTCACAAGATGACCACGTT
LOC_Os10g30700
OsAffx.8078.1.S1_at--174--7471Chr10:15660438..15660462 (25 bp)
GTGTGTCTGAGGGAAAACGGATCCA
LOC_Os10g30700
OsAffx.8078.1.S1_at--934--8151Chr10:15660427..15660451 (25 bp)
GGAAAACGGATCCATCTCTTTCTCG
LOC_Os10g30700
Target Sequence 
ATGCCCCGTTTACTTGGGACAGACGGCAGCGGCGTCCTCGTTATGATCTTCATGGAGGCATCGTTTGAAGGTCCATTTCC
TTTAAATATTTCTCCAGACGACCGTCCTCTTTGCGGTGGTGCTTATGACTTTCACAAGATGACCACGTTGGCGGGTGTGT
CTGAGGGAAAACGGATCCATCTCTTTCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8078.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis