Browse Element(s) Details


OsAffx.8152.1.S1_at

Description gb:NM_196363.1
DB_XREF= gi:37534085
TID=OsAffx.8152.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative retroelement (OSJNBa0050N08.4), mRNA.
PROD=putative retroelement
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2592011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g432101/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25880NANA10+13081191..13084243hypothetical protein
LOC_Os10g25890Os.1709.1.S1_x_at6/1110+13085193..13089835retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g25900Os.46683.1.S1_at11/1110+13091589..13092225disease resistance response protein, putative, expressed
LOC_Os10g25910OsAffx.8153.1.S1_at11/1110+13096417..13098097transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25920OsAffx.8152.1.S1_at11/1110+13100180..13101379transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25930Os.46333.1.S1_at2/1110+13106703..13108209Cys/Met metabolism PLP-dependent enzyme family protein
LOC_Os10g25930Os.46333.1.S1_x_at2/1110+13106703..13108209Cys/Met metabolism PLP-dependent enzyme family protein
LOC_Os10g25940NANA10+13112221..13112758hypothetical protein
LOC_Os10g25950Os.46333.1.S1_x_at3/1110+13117793..13119521Cys/Met metabolism PLP-dependent enzyme family protein
LOC_Os10g25950Os.46333.1.S1_at1/1110+13117793..13119521Cys/Met metabolism PLP-dependent enzyme family protein
LOC_Os10g25960OsAffx.10637.1.S1_s_at11/1110+13120714..13124400transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25960OsAffx.10637.3.S1_s_at9/1110+13120714..13124400transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25960OsAffx.10637.4.S1_s_at7/1110+13120714..13124400transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25980OsAffx.32056.1.S1_at11/1110+13125906..13130378transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25980OsAffx.32056.1.S1_x_at10/1110+13125906..13130378transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25980OsAffx.30536.1.S1_x_at1/1110+13125906..13130378transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8152.1.S1_at--39--2731Chr10:13100742..13100766 (25 bp)
AAGCAGCGAATGACCTTCTTTATGA
LOC_Os10g25920
OsAffx.8152.1.S1_at--1086--3491Chr10:13100699..13100723 (25 bp)
CATGGACTATGTGGTGTTACGCTCT
LOC_Os10g25920
OsAffx.8152.1.S1_at--5--8793Chr11:14619952..14619971 (20 bp)
TGTTACGCTCTGTGCTTGAACTTCT
NONE
OsAffx.8152.1.S1_at--612--7771Chr10:13100637..13100661 (25 bp)
GGTCCAACATTAGCTTCAACGATTT
LOC_Os10g25920
OsAffx.8152.1.S1_at--941--8611Chr10:13100610..13100634 (25 bp)
TGGGTCTGTCGAGAGTTATGCTTCC
LOC_Os10g25920
OsAffx.8152.1.S1_at--570--10631Chr10:13100589..13100613 (25 bp)
TTCCTAAGCCGAACTTGTTGCCGAC
LOC_Os10g25920
OsAffx.8152.1.S1_at--228--6692Chr11:25559105..25559128 (24 bp)
GTTGCCGACCAACACATATCAAGCT
LOC_Os11g43210
OsAffx.8152.1.S1_at--134--771Chr10:13100537..13100561 (25 bp)
ATGTCCATTATCTCTAGGTATTCAA
LOC_Os10g25920
OsAffx.8152.1.S1_at--1157--111Chr10:13100425..13100533 (25 bp)
ATTCATACGGGCAACAGAGTCTCAG
LOC_Os10g25920
OsAffx.8152.1.S1_at--965--2231Chr10:13100355..13100379 (25 bp)
AAATTTCGGCTATGGTGATGTGGTA
LOC_Os10g25920
OsAffx.8152.1.S1_at--1152--5371Chr10:13100309..13100333 (25 bp)
GAAGCAACTGTTTTCAAACCTACAG
LOC_Os10g25920
Target Sequence 
AAGCAGCGAATGACCTTCTTTATGATGAATCGGAAGGATGTGACATGGACTATGTGGTGTTACGCTCTGTGCTTGAACTT
CTCATATTGAAGACCAGACATAGATGGTCCAACATTAGCTTCAACGATTTGATGGGTCTGTCGAGAGTTATGCTTCCTAA
GCCGAACTTGTTGCCGACCAACACATATCAAGCTAAGAAACTAATATGTCCATTATCTCTAGGTATTCAAAAGATTCATA
CGGGCAACAGAGTCTCAGACAAAGATGTGGTCAACCAAGATTCATCGGTGGATGCAAAGGAAAAAATTTCGGCTATGGTG
ATGTGGTACCTGCCAGTGAAAGATCGCCTGAAGCAACTGTTTTCAAACCTACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8152.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis