Browse Element(s) Details


OsAffx.8167.2.S1_at

Description tigr:9638.m02121
TID=OsAffx.8167.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2516011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25120NANA10+12630471..12633214hypothetical protein
LOC_Os10g25130Os.3350.1.S2_a_at11/1110+12636473..12642866Alanine aminotransferase 2, putative, expressed
LOC_Os10g25130Os.3350.1.S1_at11/1110+12636473..12642866Alanine aminotransferase 2, putative, expressed
LOC_Os10g25130Os.3350.1.S1_a_at11/1110+12636473..12642866Alanine aminotransferase 2, putative, expressed
LOC_Os10g25140Os.12002.1.S1_a_at11/1110+12646015..12651092Alanine aminotransferase 2, putative, expressed
LOC_Os10g25150Os.12002.1.S2_at8/1110+12651629..12652123expressed protein
LOC_Os10g25160OsAffx.8167.2.S1_at11/1110+12657954..12658256hypothetical protein
LOC_Os10g25170Os.56665.1.A1_at11/1110+12660665..12662029AP2 domain containing protein, expressed
LOC_Os10g25180Os.46294.1.S1_at10/1110+12666644..12669510hypothetical protein
LOC_Os10g25190OsAffx.8166.1.S1_at4/1110+12671153..12671479transposon protein, putative, unclassified
LOC_Os10g25200Os.3343.1.S1_at11/1110+12674765..12682733expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8167.2.S1_at--98--551Chr10:12658135..12658159 (25 bp)
ATCCGTTGCCGCCTAGTCAAGCTTG
LOC_Os10g25160
OsAffx.8167.2.S1_at--223--6691Chr10:12658131..12658155 (25 bp)
GTTGCCGCCTAGTCAAGCTTGCGTT
LOC_Os10g25160
OsAffx.8167.2.S1_at--573--10691Chr10:12658130..12658154 (25 bp)
TTGCCGCCTAGTCAAGCTTGCGTTC
LOC_Os10g25160
OsAffx.8167.2.S1_at--151--4451Chr10:12658125..12658149 (25 bp)
GCCTAGTCAAGCTTGCGTTCCTCGT
LOC_Os10g25160
OsAffx.8167.2.S1_at--425--4271Chr10:12658124..12658148 (25 bp)
CCTAGTCAAGCTTGCGTTCCTCGTC
LOC_Os10g25160
OsAffx.8167.2.S1_at--853--3851Chr10:12658091..12658115 (25 bp)
CTGTCGCCTCCACCGAACTCTACGT
LOC_Os10g25160
OsAffx.8167.2.S1_at--1029--9531Chr10:12658073..12658097 (25 bp)
TCTACGTCCCCAAGTAGCTCAAGCT
LOC_Os10g25160
OsAffx.8167.2.S1_at--324--4051Chr10:12658035..12658059 (25 bp)
CGATTTCATGGTGAAGACGGAGCTC
LOC_Os10g25160
OsAffx.8167.2.S1_at--618--191Chr10:12658033..12658057 (25 bp)
ATTTCATGGTGAAGACGGAGCTCTT
LOC_Os10g25160
OsAffx.8167.2.S1_at--1089--3471Chr10:12658000..12658024 (25 bp)
CAGGAGAGGCGAACCTTGAGCTCGT
LOC_Os10g25160
OsAffx.8167.2.S1_at--1152--6011Chr10:12657997..12658021 (25 bp)
GAGAGGCGAACCTTGAGCTCGTGCT
LOC_Os10g25160
Target Sequence 
ATCCGTTGCCGCCTAGTCAAGCTTGCGTTCCTCGTCCCCAAGCTCTGTCGCCTCCACCGAACTCTACGTCCCCAAGTAGC
TCAAGCTCCGCCGGCGAGCTCGATTTCATGGTGAAGACGGAGCTCTTGGAGGTGGCAGGAGAGGCGAACCTTGAGCTCGT
GCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8167.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis