Browse Element(s) Details


OsAffx.8227.1.S1_at

Description gb:NM_196030.1
DB_XREF= gi:37533419
TID=OsAffx.8227.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0058E19.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g216609/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g21620NANA10+10742995..10743578hypothetical protein
LOC_Os10g21630OsAffx.18335.1.S1_at10/1110+10746408..10747140expressed protein
LOC_Os10g21640NANA10+10752819..10753211hypothetical protein
LOC_Os10g21660Os.46572.1.S1_at11/1110+10756636..10766649expressed protein
LOC_Os10g21660OsAffx.8227.1.S1_s_at10/1110+10756636..10766649expressed protein
LOC_Os10g21660OsAffx.8227.1.S1_at9/1110+10756636..10766649expressed protein
LOC_Os10g21660OsAffx.8227.2.S1_at1/1110+10756636..10766649expressed protein
LOC_Os10g21670Os.6812.1.S1_at11/1110+10778872..10779654dehydration stress-induced protein, putative, expressed
LOC_Os10g21679NANA10+10783566..10783886NA
LOC_Os10g21690OsAffx.30485.1.S1_at11/1110+10788510..10790284hypothetical protein
LOC_Os10g21690OsAffx.20879.1.S1_at1/1110+10788510..10790284hypothetical protein
LOC_Os10g21690Os.27004.1.A1_at1/1110+10788510..10790284hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006808biological_processregulation of nitrogen utilization
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8227.1.S1_at--940--131Chr10:10762920..10762944 (25 bp)
ATTACATGATGCAGGTTAGCAACAC
LOC_Os10g21660
OsAffx.8227.1.S1_at--364--2111Chr10:10762917..10762941 (25 bp)
ACATGATGCAGGTTAGCAACACAAG
LOC_Os10g21660
OsAffx.8227.1.S1_at--795--631Chr10:10762912..10762936 (25 bp)
ATGCAGGTTAGCAACACAAGGATCT
LOC_Os10g21660
OsAffx.8227.1.S1_at--910--3471Chr10:10762909..10762933 (25 bp)
CAGGTTAGCAACACAAGGATCTGCA
LOC_Os10g21660
OsAffx.8227.1.S1_at--276--7891Chr10:10762908..10762931 (24 bp)
GGTTAGCAACACAAGGATCTGCATC
LOC_Os10g21660
OsAffx.8227.1.S1_at--563--3211Chr10:10762730..10762920 (25 bp)
CAAGGATCTGCATCTGGCCTGGCAG
LOC_Os10g21660
OsAffx.8227.1.S1_at--624--2911Chr10:10762729..10762919 (25 bp)
AAGGATCTGCATCTGGCCTGGCAGC
LOC_Os10g21660
OsAffx.8227.1.S1_at--1094--10751NONE
TTGACAGGCAGGAAACTCTTTGTCG
NONE
OsAffx.8227.1.S1_at--574--2111NONE
ACAGGCAGGAAACTCTTTGTCGTGT
NONE
OsAffx.8227.1.S1_at--730--3451Chr10:10761263..10761282 (20 bp)
CAGGCAGGAAACTCTTTGTCGTGTC
LOC_Os10g21660
OsAffx.8227.1.S1_at--131--931Chr10:10761262..10761282 (21 bp)
AGGCAGGAAACTCTTTGTCGTGTCT
LOC_Os10g21660
Target Sequence 
ATTACATGATGCAGGTTAGCAACACAAGGATCTGCATCTGGCCTGGCAGCTTGTTCCTTAGAAGCTACAAAAACAACGGA
GAAGATGAACAGCAGCACCCATGTTTGACAGGCAGGAAACTCTTTGTCGTGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8227.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis