Browse Element(s) Details


OsAffx.8227.2.S1_at

Description tigr:9638.m01815
TID=OsAffx.8227.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g216601/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g21620NANA10+10742995..10743578hypothetical protein
LOC_Os10g21630OsAffx.18335.1.S1_at10/1110+10746408..10747140expressed protein
LOC_Os10g21640NANA10+10752819..10753211hypothetical protein
LOC_Os10g21660Os.46572.1.S1_at11/1110+10756636..10766649expressed protein
LOC_Os10g21660OsAffx.8227.1.S1_s_at10/1110+10756636..10766649expressed protein
LOC_Os10g21660OsAffx.8227.1.S1_at9/1110+10756636..10766649expressed protein
LOC_Os10g21660OsAffx.8227.2.S1_at1/1110+10756636..10766649expressed protein
LOC_Os10g21670Os.6812.1.S1_at11/1110+10778872..10779654dehydration stress-induced protein, putative, expressed
LOC_Os10g21679NANA10+10783566..10783886NA
LOC_Os10g21690OsAffx.30485.1.S1_at11/1110+10788510..10790284hypothetical protein
LOC_Os10g21690OsAffx.20879.1.S1_at1/1110+10788510..10790284hypothetical protein
LOC_Os10g21690Os.27004.1.A1_at1/1110+10788510..10790284hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006808biological_processregulation of nitrogen utilization
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8227.2.S1_at--118--3931Chr10:10768093..10768117 (25 bp)
CGGCGCGATGCTTCGATTAGGGCTT
NONE
OsAffx.8227.2.S1_at--106--4131Chr10:10768090..10768114 (25 bp)
CGCGATGCTTCGATTAGGGCTTAGT
NONE
OsAffx.8227.2.S1_at--434--4632Chr05:12508275..12508294 (20 bp)
GCGATGCTTCGATTAGGGCTTAGTA
NONE
OsAffx.8227.2.S1_at--571--4052Chr05:12508275..12508295 (21 bp)
CGATGCTTCGATTAGGGCTTAGTAT
NONE
OsAffx.8227.2.S1_at--975--631Chr10:10768086..10768110 (25 bp)
ATGCTTCGATTAGGGCTTAGTATGC
NONE
OsAffx.8227.2.S1_at--577--10614Chr08:22377511..22377530 (20 bp)
TTCGATTAGGGCTTAGTATGCTAGA
NONE
OsAffx.8227.2.S1_at--661--153Chr08:22377511..22377534 (24 bp)
ATTAGGGCTTAGTATGCTAGAACAT
NONE
OsAffx.8227.2.S1_at--19--7596Chr10:6477202..6477238 (25 bp)
GGGCTTAGTATGCTAGAACATGGTA
NONE
OsAffx.8227.2.S1_at--632--3597Chr11:17185143..17185166 (24 bp)
CTTAGTATGCTAGAACATGGTAGGG
NONE
OsAffx.8227.2.S1_at--399--10011NONE
TAGAACATGGTAGGGGCTCTTGTCG
NONE
OsAffx.8227.2.S1_at--1133--8851Chr10:10762849..10762938 (25 bp)
TGATGCAGAAGCTAGAGTACACTGC
LOC_Os10g21660
Target Sequence 
CGGCGCGATGCTTCGATTAGGGCTTAGTATGCTAGAACATGGTAGGGGCTCTTGTCGTGGCCAAGGAAGCAGCGAGTCGG
GAATGGCATCGCCTGATGCATGTGTGGAGGACAAAGTTCATCGCATCTTCTTGGATTTCATGACCAAGGTTGCACGGTAT
GACGAGCTAGTTGATGCAGAACATTTTTGGAGACCAAAGCTCCTCACAGAGTCAAGTGCCATAATTGAGATAGTTAAGTC
TAACTACAGTGACAGAATGAGGTCTTATCTTGAAGCTGGCTGCACCCATCACAATGAAATCATCCAGAACATGAACCGGT
CCAAATTATTGCTGGAAGAGCTCCAGTTTCTGGAGGAAGATGTTTACAGTGCTGCACTAACAGCCAGTCTGAGTTCTTCA
AGAAATACGGATGATTGCCCTGATCATGATAATCTTACAAATGTTTGTTCTGAGGATGAACAACAGCCTGAAGATTGGCT
GGACGGAGCAGTGTCTTTTGCAAGTGTGATTGTCCTGGTTCACAATATGTTAAAAATGGATTACATGATGCAGAAGCTAG
AGTACACTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8227.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis