Browse Element(s) Details


OsAffx.8299.1.A1_at

Description gb:NM_195690.1
DB_XREF= gi:37532739
TID=OsAffx.8299.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0065C16.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g061441/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g06100Os.36736.1.S1_x_at1/114+3154460..3157526transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g06100Os.45976.1.S1_x_at1/114+3154460..3157526transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g06100Os.36736.1.S1_at1/114+3154460..3157526transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g06110NANA4+3159409..3163929retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06120NANA4+3169003..3170205retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06130Os.8606.1.S1_at1/114+3171738..3179221retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06130OsAffx.22947.1.S1_x_at1/114+3171738..3179221retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06144OsAffx.8299.1.A1_x_at1/114+3180606..3193224retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06144OsAffx.8299.1.A1_at1/114+3180606..3193224retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06160Os.27691.2.S1_x_at2/114+3194355..3195526retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06160Os.27691.1.S1_x_at2/114+3194355..3195526retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06170NANA4+3199890..3200375hypothetical protein
LOC_Os04g06180NANA4+3200852..3201889transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g06190NANA4+3204051..3205109transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g06200NANA4+3208388..3209725transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g06210OsAffx.25876.1.S1_at11/114+3209969..3210612Protein kinase domain containing protein
LOC_Os04g06220OsAffx.21000.1.S1_at1/114+3212265..3217695retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8299.1.A1_at--724--4491Chr10:8614809..8614833 (25 bp)
GCCGTTGTGTTCACCTCCTCGAGCG
NONE
OsAffx.8299.1.A1_at--665--6631Chr10:8614812..8614836 (25 bp)
GTTGTGTTCACCTCCTCGAGCGCCA
NONE
OsAffx.8299.1.A1_at--844--1131Chr10:8614852..8614876 (25 bp)
AGTCGGCCGAATCCGCAGCCGGAAT
NONE
OsAffx.8299.1.A1_at--147--551Chr10:8614882..8614906 (25 bp)
ATCCCTCTTGCACCGGTGAGCATCG
NONE
OsAffx.8299.1.A1_at--822--6711Chr10:8614958..8614982 (25 bp)
GTTCTCTAACCTCCCTCATTTTGTT
NONE
OsAffx.8299.1.A1_at--273--9811Chr10:8614964..8614988 (25 bp)
TAACCTCCCTCATTTTGTTCTTTAG
NONE
OsAffx.8299.1.A1_at--364--3751Chr10:8614968..8614992 (25 bp)
CTCCCTCATTTTGTTCTTTAGGTCA
NONE
OsAffx.8299.1.A1_at--1110--3575Chr10:8614974..8614998 (25 bp)
CATTTTGTTCTTTAGGTCATCCCGG
NONE
OsAffx.8299.1.A1_at--95--10411Chr10:8614976..8615000 (25 bp)
TTTTGTTCTTTAGGTCATCCCGGAG
NONE
OsAffx.8299.1.A1_at--1112--10772Chr10:8614978..8615002 (25 bp)
TTGTTCTTTAGGTCATCCCGGAGCC
NONE
OsAffx.8299.1.A1_at--551--8792Chr10:8614979..8615003 (25 bp)
TGTTCTTTAGGTCATCCCGGAGCCC
NONE
Target Sequence 
GCCGTTGTGTTCACCTCCTCGAGCGCCACCCCGTCCACCCCTCAGTCGGCCGAATCCGCAGCCGGAATCCGCCATCCCTC
TTGCACCGGTGAGCATCGCCATGGTCGCCGCCTTCGGCCAGCGCCCTAACTCGCTGCGGCCTCCCTCTCGTTCTCTAACC
TCCCTCATTTTGTTCTTTAGGTCATCCCGGAGCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8299.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis