Browse Element(s) Details


OsAffx.8420.1.S1_at

Description gb:NM_195181.1
DB_XREF= gi:37531721
TID=OsAffx.8420.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0095J15.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1020011/11retrotransposon protein, putative, unclassified
LOC_Os07g426901/11retrotransposon protein, putative, unclassified
LOC_Os03g368901/11retrotransposon protein, putative, unclassified
LOC_Os08g246801/11retrotransposon protein, putative, unclassified
LOC_Os04g546701/11retrotransposon protein, putative, unclassified, expressed
LOC_Os03g613901/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10180Os.8014.2.S1_x_at11/1110+5358976..5361780CMV 1a interacting protein 1, putative, expressed
LOC_Os10g10180Os.8014.1.S1_at10/1110+5358976..5361780CMV 1a interacting protein 1, putative, expressed
LOC_Os10g10180Os.30608.1.S1_at6/1110+5358976..5361780CMV 1a interacting protein 1, putative, expressed
LOC_Os10g10180Os.30608.1.S1_x_at5/1110+5358976..5361780CMV 1a interacting protein 1, putative, expressed
LOC_Os10g10190Os.50827.1.S1_x_at11/1110+5361092..5376517ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os10g10190Os.46916.1.S1_at1/1110+5361092..5376517ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os10g10190Os.11220.1.S1_at1/1110+5361092..5376517ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os10g10200OsAffx.8420.1.S1_x_at11/1110+5380238..5383712retrotransposon protein, putative, unclassified
LOC_Os10g10200OsAffx.8420.1.S1_at11/1110+5380238..5383712retrotransposon protein, putative, unclassified
LOC_Os10g10200OsAffx.22927.2.S1_x_at1/1110+5380238..5383712retrotransposon protein, putative, unclassified
LOC_Os10g10214OsAffx.21171.4.S1_x_at2/1110+5384615..5388949transposon protein, putative, unclassified
LOC_Os10g10214OsAffx.21171.3.S1_x_at1/1110+5384615..5388949transposon protein, putative, unclassified
LOC_Os10g10230OsAffx.18202.1.S1_at6/1110+5392988..5395183retrotransposon, putative, centromere-specific
LOC_Os10g10230OsAffx.8356.1.S1_x_at1/1110+5392988..5395183retrotransposon, putative, centromere-specific
LOC_Os10g10230Os.54774.1.S1_x_at1/1110+5392988..5395183retrotransposon, putative, centromere-specific
LOC_Os10g10244Os.11722.1.S1_a_at11/1110+5398540..5409129Alanyl-tRNA synthetase, mitochondrial precursor, putative, expressed
LOC_Os10g10244Os.11722.3.S1_at11/1110+5398540..5409129Alanyl-tRNA synthetase, mitochondrial precursor, putative, expressed
LOC_Os10g10244Os.11722.3.S1_x_at10/1110+5398540..5409129Alanyl-tRNA synthetase, mitochondrial precursor, putative, expressed
LOC_Os10g10244OsAffx.20054.1.S1_at1/1110+5398540..5409129Alanyl-tRNA synthetase, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8420.1.S1_at--229--9191Chr10:5382904..5382928 (25 bp)
TGCCGGGAAAGGGACGCCGTGCTTG
LOC_Os10g10200
OsAffx.8420.1.S1_at--615--6971Chr10:5382931..5382955 (25 bp)
GTACGCGAGGCCAAGGTGAACCGCC
LOC_Os10g10200
OsAffx.8420.1.S1_at--905--4071Chr10:5382981..5383005 (25 bp)
CGAGCAACTCGCGATGCGTGAGGAG
LOC_Os10g10200
OsAffx.8420.1.S1_at--230--8296Chr10:5383074..5383098 (25 bp)
GGCTTCCCTTGAGGCCCGGGAGAAG
LOC_Os10g10200
OsAffx.8420.1.S1_at--738--1211Chr10:5383133..5383157 (25 bp)
AGTTGGTGAACCAGCTCACCGCGGC
LOC_Os10g10200
OsAffx.8420.1.S1_at--1076--8291Chr10:5383155..5383179 (25 bp)
GGCTCAAAACACTCTCGTCGACCTG
LOC_Os10g10200
OsAffx.8420.1.S1_at--1095--9491Chr10:5383253..5383277 (25 bp)
TCTCCGATGCCGTTGAACGGCTGGA
LOC_Os10g10200
OsAffx.8420.1.S1_at--1111--8411Chr10:5383562..5383586 (25 bp)
GGCCGATGCTATCATCTCCAGCTTC
LOC_Os10g10200
OsAffx.8420.1.S1_at--468--9431Chr10:5383601..5383625 (25 bp)
TCGGTTAAACCTCGCGCTAGCTTTA
LOC_Os10g10200
OsAffx.8420.1.S1_at--833--9831Chr10:5383606..5383630 (25 bp)
TAAACCTCGCGCTAGCTTTAGACGA
LOC_Os10g10200
OsAffx.8420.1.S1_at--1139--4131Chr10:5383613..5383637 (25 bp)
CGCGCTAGCTTTAGACGAGGAGAGC
LOC_Os10g10200
Target Sequence 
TGCCGGGAAAGGGACGCCGTGCTTGCCGTACGCGAGGCCAAGGTGAACCGCCGCGAGGTGGCGGCGTGCCGGCAGGGCGA
GCAACTCGCGATGCGTGAGGAGGCCGTTGCCGGGCGCGAGGCCCGGCATCTGGAAAGCGCCCACGCTGAGCGCGCGGCGA
TGGCGGCGAGGGCTTCCCTTGAGGCCCGGGAGAAGGAACTGGTGGCAGGCGGGCAGTTCGGCGGCGCGGAGTTGGTGAAC
CAGCTCACCGCGGCTCAAAACACTCTCGTCGACCTGGGGCGCTTGGTGCAGGACCAAGCCGGGGAGATCGCGGCCCTCCG
CCTCACCAACGAGATTGGACCTGGCCAACTCTCCGATGCCGTTGAACGGCTGGAGTGCGCGGGGCGCCGGGACTTCCCCC
TGGGGACCGAGGCGAGGGCTCGGGAGCAAGTCCGGGAGGCGGCCGATGCTATCATCTCCAGCTTCGAGGGGTCGGCCCCT
CGGTTAAACCTCGCGCTAGCTTTAGACGAGGAGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8420.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis