Browse Element(s) Details


OsAffx.8464.1.S1_at

Description gb:NM_195012.1
DB_XREF= gi:37531383
TID=OsAffx.8464.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative retroelement (OSJNBb0015J03.20), mRNA.
PROD=putative retroelement
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0834011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g176301/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g08319Os.46718.1.S1_at11/1110+4263848..4269339Cytochrome P450 family protein, expressed
LOC_Os10g08340OsAffx.8464.1.S1_at11/1110+4279230..4281428retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08350Os.46306.1.S1_x_at8/1110+4290087..4293182transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08360NANA10+4298948..4299955transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08370Os.45976.1.S1_x_at3/1110+4300210..4302400transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08370Os.45976.1.S1_at3/1110+4300210..4302400transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8464.1.S1_at--80--3691Chr10:4279998..4280022 (25 bp)
CTATTATTCCTTTTGAGTCTCCCGA
LOC_Os10g08340
OsAffx.8464.1.S1_at--615--4051Chr10:4279834..4279857 (24 bp)
CGAGTTGTATGGTGTCTATCTTTTC
LOC_Os10g08340
OsAffx.8464.1.S1_at--208--7271Chr10:4279643..4279667 (25 bp)
GTCCTTAGACATCGTGTGCCTGAGA
LOC_Os10g08340
OsAffx.8464.1.S1_at--464--1051Chr10:4279552..4279576 (25 bp)
AGGGAATCCGTAGCTTCCTCGGTCA
LOC_Os10g08340
OsAffx.8464.1.S1_at--562--8131Chr10:4279500..4279524 (25 bp)
GGACTTTTCTACAATTGGCAGACCT
LOC_Os10g08340
OsAffx.8464.1.S1_at--571--7971Chr10:4279455..4279479 (25 bp)
GGATGTGCCCTTTGAGTTTAACGAC
LOC_Os10g08340
OsAffx.8464.1.S1_at--674--5751Chr10:4279433..4279457 (25 bp)
GACGAGTGCCTTAATTCCTTTGAAA
LOC_Os10g08340
OsAffx.8464.1.S1_at--357--3072Chr04:9624587..9624609 (23 bp)
AATCATCCAACCTCCTGATGGGACA
LOC_Os04g17630
OsAffx.8464.1.S1_at--327--7631Chr10:4279361..4279385 (25 bp)
GGGACACTCCCATTCGAGATTATGT
LOC_Os10g08340
OsAffx.8464.1.S1_at--752--6551Chr10:4279344..4279368 (25 bp)
GATTATGTGTGATGCCCGTGATTTT
LOC_Os10g08340
OsAffx.8464.1.S1_at--1032--8811Chr10:4279326..4279350 (25 bp)
TGATTTTCCTGTTGGTGCGGTTTTA
LOC_Os10g08340
Target Sequence 
CTATTATTCCTTTTGAGTCTCCCGAATCACTTCTTGAAAATAATGTCTCAGATTTCATTGAGGAAGAAGAAGATTCCGAG
TTGTATGGTGTCTATCTTTTCGGACATGATCGAATACATTATGGAGAGATTGTCCTTAGACATCGTGTGCCTGAGAGAGG
TATAGAGGTGGATCAAGCTAAGATAGAGGTGATAGATCAACTTCCACCTCCGGTGAGTATCAAGGGAATCCGTAGCTTCC
TCGGTCATGCTGGTTTCTATAGAAGGTTCATTAAGGACTTTTCTACAATTGGCAGACCTCTGACCAACCTGTTAGTTAAG
GATGTGCCCTTTGAGTTTAACGACGAGTGCCTTAATTCCTTTGAAATCCTCAAAAAGGCACCCGTTTCTGCCCCAATCAT
CCAACCTCCTGATGGGACACTCCCATTCGAGATTATGTGTGATGCCCGTGATTTTCCTGTTGGTGCGGTTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8464.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis