Browse Element(s) Details


OsAffx.8558.1.S1_at

Description gb:NM_194597.1
DB_XREF= gi:37530553
TID=OsAffx.8558.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative non-LTR retroelement reverse transcriptase (OSJNBa0092N12.6), mRNA.
PROD=putative non-LTR retroelement reversetranscriptase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0257011/11retrotransposon protein, putative, unclassified
LOC_Os06g282703/11hypothetical protein
LOC_Os01g228102/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02520Os.14919.1.S1_at1/1110+931739..935463transposon protein, putative, Mutator sub-class
LOC_Os10g02520Os.56216.1.S1_at1/1110+931739..935463transposon protein, putative, Mutator sub-class
LOC_Os10g02530OsAffx.20794.1.S1_at11/1110+943511..944104hypothetical protein
LOC_Os10g02544OsAffx.22699.1.S1_x_at2/1110+944462..949662retrotransposon protein, putative, unclassified
LOC_Os10g02560NANA10+950042..953245hypothetical protein
LOC_Os10g02570OsAffx.8558.1.S1_at11/1110+955005..956100retrotransposon protein, putative, unclassified
LOC_Os10g02584Os.20496.2.S1_a_at8/1110+960885..961971GAGA binding protein-like family protein
LOC_Os10g02584Os.23269.1.S1_s_at2/1110+960885..961971GAGA binding protein-like family protein
LOC_Os10g02600Os.51841.1.S1_x_at1/1110+976794..979110Zinc knuckle family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8558.1.S1_at--141--10751Chr10:956040..956064 (25 bp)
TTGAGGGATCTTTTCCCCAATCCGG
LOC_Os10g02570
OsAffx.8558.1.S1_at--363--10171Chr10:955949..955973 (25 bp)
TATCAGATAAAGCACCTGGCCCTGA
LOC_Os10g02570
OsAffx.8558.1.S1_at--784--10093Chr11:13065794..13065818 (25 bp)
TAGGCAAGGAGATCCACTCTCACCA
NONE
OsAffx.8558.1.S1_at--140--10274Chr02:8473963..8473983 (21 bp)
TTTGTTCTTGGTGCTGAGTTGCTGC
NONE
OsAffx.8558.1.S1_at--594--2353Chr11:13065864..13065888 (25 bp)
AAAGCTTGCTCCTTAGGTCTGTTGA
NONE
OsAffx.8558.1.S1_at--894--6311Chr10:955232..955256 (25 bp)
GATGACACTTCAATTCTTCTCAAAG
LOC_Os10g02570
OsAffx.8558.1.S1_at--542--3152Chr10:955169..955193 (25 bp)
AATTCTTTTGCACATTCTACTGGCC
LOC_Os10g02570
OsAffx.8558.1.S1_at--948--5211Chr10:955137..955161 (25 bp)
GAATTACCATAAGTCCTGTCTCTAC
LOC_Os10g02570
OsAffx.8558.1.S1_at--557--5272Chr10:955092..955116 (25 bp)
GAATGCAGTGCTTTTTGCTGGTCTG
LOC_Os10g02570
OsAffx.8558.1.S1_at--946--7792Chr10:955073..955097 (25 bp)
GGTCTGCTTGGGTGCACCATAGGCA
LOC_Os10g02570
OsAffx.8558.1.S1_at--1056--8234Chr11:13066122..13066146 (25 bp)
GGCACAATGCCTTTTACTTATTTGG
NONE
Target Sequence 
TTGAGGGATCTTTTCCCCAATCCGGAAAACTTGGATTGTTTGGTGGATCAGTTCTACACTCAGGAGAAGGACAATCTTAT
TAAGGTAATTCTATCAGATAAAGCACCTGGCCCTGATGGGTTTAATGGGTTTTTTCTTAAGAAATGTTGGCAAATCATAT
CACAGGACTTCTACAGGGGGGTTAGGCAAGGAGATCCACTCTCACCATTGCTTTTTGTTCTTGGTGCTGAGTTGCTGCAG
AGAATAGTTAACAAAGCTTGCTCCTTAGGTCTGTTGACCAAGTCAATTAATGAACTTGATGAGAGGGGTTTCCCAATAAT
ACAGTATGCTGATGACACTTCAATTCTTCTCAAAGCATTGCAGAGAGAGGTGTTCTGTTTTAAGGCATTGTTGAATTCTT
TTGCACATTCTACTGGCCTCAAAGTGAATTACCATAAGTCCTGTCTCTACCCAATCAATTTATCTCATGAGAATGCAGTG
CTTTTTGCTGGTCTGCTTGGGTGCACCATAGGCACAATGCCTTTTACTTATTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8558.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis