Browse Element(s) Details


OsAffx.8789.1.S1_at

Description gb:XM_353935.1
DB_XREF= gi:35189303
GEN=P0514G12.31
TID=OsAffx.8789.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g408202/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g40780OsAffx.25458.1.S1_at11/113+22625469..22630287expressed protein
LOC_Os03g40780OsAffx.5900.1.S1_at1/113+22625469..22630287expressed protein
LOC_Os03g40790OsAffx.13272.1.S1_at11/113+22638605..22638883hypothetical protein
LOC_Os03g40800NANA3+22643748..22644934hypothetical protein
LOC_Os03g40820OsAffx.8789.1.S1_at2/113+22648735..22651324retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g40830Os.54563.1.S1_at11/113+22657624..22660140cucumisin-like serine protease, putative, expressed
LOC_Os03g40840OsAffx.16811.2.S1_at10/113+22664724..22667796hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8789.1.S1_at--912--1356Chr11:3265063..3265083 (21 bp)
AGAGAGAGCTCCACCCTATATATGT
NONE
OsAffx.8789.1.S1_at--1152--5994Chr11:3265066..3265272 (25 bp)
GAGAGCTCCACCCTATATATGTGTT
NONE
OsAffx.8789.1.S1_at--1091--5893Chr08:12885669..12885690 (22 bp)
GAGCTCCACCCTATATATGTGTTCA
NONE
OsAffx.8789.1.S1_at--372--4793Chr08:12885669..12885688 (20 bp)
GCTCCACCCTATATATGTGTTCATT
NONE
OsAffx.8789.1.S1_at--391--41916Chr12:4240193..4240306 (25 bp)
CCCTATATATGTGTTCATTGTCTAC
NONE
OsAffx.8789.1.S1_at--787--95319Chr12:4240302..4240325 (24 bp)
TCTACTTCTGCAATGTTCTTGAGGA
NONE
OsAffx.8789.1.S1_at--602--3658Chr12:4240306..4240434 (25 bp)
CTTCTGCAATGTTCTTGAGGACAAA
NONE
OsAffx.8789.1.S1_at--1129--6631Chr06:563128..563152 (25 bp)
GTTGTACATCATCTCACGTCTCTAT
NONE
OsAffx.8789.1.S1_at--610--8751Chr06:563126..563150 (25 bp)
TGTACATCATCTCACGTCTCTATTG
NONE
OsAffx.8789.1.S1_at--823--452Chr06:563118..563142 (25 bp)
ATCTCACGTCTCTATTGCTGTGGGA
NONE
OsAffx.8789.1.S1_at--1024--9512Chr06:563117..563141 (25 bp)
TCTCACGTCTCTATTGCTGTGGGAG
NONE
Target Sequence 
AGAGAGAGCTCCACCCTATATATGTGTTCATTGTCTACTTCTGCAATGTTCTTGAGGACAAAGGGATGGGCGCGGGTGTT
GTACATCATCTCACGTCTCTATTGCTGTGGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8789.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis