Browse Element(s) Details


OsAffx.8843.1.S1_at

Description tigr:9635.m00132
TID=OsAffx.8843.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0226011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02210Os.5400.1.S1_at11/117+701316..703801Eukaryotic translation initiation factor 5A-1/2, putative, expressed
LOC_Os07g02230OsAffx.30397.3.S1_x_at11/117+705311..716673hypothetical protein
LOC_Os07g02230OsAffx.28232.1.A1_at10/117+705311..716673hypothetical protein
LOC_Os07g02230OsAffx.30397.1.S1_x_at9/117+705311..716673hypothetical protein
LOC_Os07g02230OsAffx.30397.2.S1_at6/117+705311..716673hypothetical protein
LOC_Os07g02240OsAffx.16042.1.S1_at11/117+716901..718126transcription factor X1, putative
LOC_Os07g02250Os.30485.1.S1_at11/117+721178..724795expressed protein
LOC_Os07g02260OsAffx.8843.1.S1_at11/117+724976..725668expressed protein
LOC_Os07g02270OsAffx.16043.1.S1_at11/117+734314..737018hypothetical protein
LOC_Os07g02280OsAffx.21080.1.S1_at11/117+741230..743134pentatricopeptide, putative, expressed
LOC_Os07g02290OsAffx.16045.1.S1_at11/117+747870..751388F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8843.1.S1_at--616--1691Chr07:725051..725074 (24 bp)
ACCACCACCAAGGAACGGCTGGAGT
LOC_Os07g02260
OsAffx.8843.1.S1_at--3--2811Chr07:725225..725249 (25 bp)
AAGATGAGCAGCTATCCCTGGACGC
LOC_Os07g02260
OsAffx.8843.1.S1_at--852--531Chr07:725238..725262 (25 bp)
ATCCCTGGACGCAAAACGCGATGGA
LOC_Os07g02260
OsAffx.8843.1.S1_at--67--7291Chr07:725283..725307 (25 bp)
GTGCCATGGCTGTCGATAACCACAA
LOC_Os07g02260
OsAffx.8843.1.S1_at--471--6471Chr07:725297..725321 (25 bp)
GATAACCACAATCGGAGGATCATGA
LOC_Os07g02260
OsAffx.8843.1.S1_at--75--7971Chr07:725313..725337 (25 bp)
GGATCATGAGGCTTGCTAACCCTTA
LOC_Os07g02260
OsAffx.8843.1.S1_at--482--9791Chr07:725329..725536 (25 bp)
TAACCCTTACAGTGGGCCAGCTGAT
LOC_Os07g02260
OsAffx.8843.1.S1_at--139--7491Chr07:725526..725547 (22 bp)
GTGGGCCAGCTGATGGAGACATCCT
LOC_Os07g02260
OsAffx.8843.1.S1_at--270--5991Chr07:725538..725562 (25 bp)
GAGACATCCTGTATAACTGGGCTTG
LOC_Os07g02260
OsAffx.8843.1.S1_at--1038--10151Chr07:725584..725608 (25 bp)
TATCATTCTCTGCTCGTGCTTTGGA
LOC_Os07g02260
OsAffx.8843.1.S1_at--478--3791Chr07:725596..725620 (25 bp)
CTCGTGCTTTGGATTGTGTCATGCT
LOC_Os07g02260
Target Sequence 
ACCACCACCAAGGAACGGCTGGAGTTGAAGATGAGCAGCTATCCCTGGACGCAAAACGCGATGGACAACAGGCTGCGGGA
GGGCTGTGCCATGGCTGTCGATAACCACAATCGGAGGATCATGAGGCTTGCTAACCCTTACAGTGGGCCAGCTGATGGAG
ACATCCTGTATAACTGGGCTTGGAGTAACAATATTTCTTTCCTTATCATTCTCTGCTCGTGCTTTGGATTGTGTCATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8843.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis