Browse Element(s) Details


OsAffx.8908.1.S1_x_at

Description gb:NM_193800.1
DB_XREF= gi:34914683
GEN=P0560B06.1
TID=OsAffx.8908.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0560B06.1 (P0560B06.1), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2313011/11transposon protein, putative, Mutator sub-class
LOC_Os01g2693011/11transposon protein, putative, Mutator sub-class
LOC_Os02g462005/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g23070OsAffx.22864.1.S1_x_at11/111+12963066..12965262hypothetical protein
LOC_Os01g23080OsAffx.10661.1.S1_s_at11/111+12971980..12972822hypothetical protein
LOC_Os01g23090NANA1+12973948..12977270retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g23100OsAffx.2060.1.S1_at11/111+12979182..12980600hypothetical protein
LOC_Os01g23110NANA1+12981462..12982079retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g23120OsAffx.22722.1.S1_at3/111+12982888..12986236retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g23120OsAffx.22722.1.S1_x_at2/111+12982888..12986236retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g23130OsAffx.8908.1.S1_at11/111+12987652..12992131transposon protein, putative, Mutator sub-class
LOC_Os01g23130OsAffx.8908.1.S1_x_at11/111+12987652..12992131transposon protein, putative, Mutator sub-class
LOC_Os01g23130OsAffx.19407.1.S1_at2/111+12987652..12992131transposon protein, putative, Mutator sub-class
LOC_Os01g23130OsAffx.7337.1.S1_at1/111+12987652..12992131transposon protein, putative, Mutator sub-class
LOC_Os01g23144OsAffx.10496.1.S1_at2/111+12993369..12995320retrotransposon protein, putative, unclassified
LOC_Os01g23144OsAffx.22171.1.S1_at1/111+12993369..12995320retrotransposon protein, putative, unclassified
LOC_Os01g23160NANA1+13001282..13003696retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g23180NANA1+13009205..13011734retrotransposon protein, putative, unclassified
LOC_Os01g23190NANA1+13014932..13015777hypothetical protein
LOC_Os01g23200OsAffx.20329.1.S1_at7/111+13016204..13020541retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8908.1.S1_x_at--639--3832Chr01:15331228..15331252 (25 bp)
CTGCGATGTGGTGCTTCCAGGTGAC
LOC_Os01g26930
OsAffx.8908.1.S1_x_at--510--7772Chr01:15331219..15331243 (25 bp)
GGTGCTTCCAGGTGACGGCGCGGCG
LOC_Os01g26930
OsAffx.8908.1.S1_x_at--963--4012Chr01:15331178..15331202 (25 bp)
CGTCGGCGGTAGTCTCTCAGGCGAC
LOC_Os01g26930
OsAffx.8908.1.S1_x_at--721--7852Chr01:15331171..15331195 (25 bp)
GGTAGTCTCTCAGGCGACGGGAGGC
LOC_Os01g26930
OsAffx.8908.1.S1_x_at--218--9053Chr02:28144790..28144813 (24 bp)
TGCATGCGCCGGTACGGTGGTCACA
LOC_Os02g46200
OsAffx.8908.1.S1_x_at--396--1032Chr01:15331067..15331091 (25 bp)
AGGTCACTGGCAGCGGCATAATAGT
LOC_Os01g26930
OsAffx.8908.1.S1_x_at--669--3332Chr01:15331063..15331087 (25 bp)
CACTGGCAGCGGCATAATAGTCCCA
LOC_Os01g26930
OsAffx.8908.1.S1_x_at--246--8253Chr02:28144764..28144787 (24 bp)
GGCAGCGGCATAATAGTCCCAGCAG
LOC_Os02g46200
OsAffx.8908.1.S1_x_at--196--1633Chr02:28144764..28144785 (22 bp)
AGCGGCATAATAGTCCCAGCAGCAA
LOC_Os02g46200
OsAffx.8908.1.S1_x_at--987--3933Chr02:28144764..28144783 (20 bp)
CGGCATAATAGTCCCAGCAGCAAAG
LOC_Os02g46200
OsAffx.8908.1.S1_x_at--773--3533Chr02:28144274..28144780 (25 bp)
CATAATAGTCCCAGCAGCAAAGAAC
LOC_Os02g46200
Target Sequence 
CTGCGATGTGGTGCTTCCAGGTGACGGCGCGGCGGCTCCAGGCGTCGGCGCGTCGGCGGTAGTCTCTCAGGCGACGGGAG
GCGAGGAGGTGGCAAGCGGCGGCACAAGGGGTGGTGCGGGGGCTGCATGCGCCGGTACGGTGGTCACAGGGGCCGGCGAG
GAGGTCACTGGCAGCGGCATAATAGTCCCAGCAGCAAAGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8908.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis