Browse Element(s) Details


OsAffx.915.1.S1_at

Description gb:NM_191770.1
DB_XREF= gi:34910623
GEN=P0683B11.22
TID=OsAffx.915.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative copia-type polyprotein (P0683B11.22), mRNA.
PROD=putative copia-type polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5200011/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g0585010/11retrotransposon protein, putative, unclassified
LOC_Os07g054308/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51950Os.46012.2.S1_x_at7/111+30187693..30193271retrotransposon protein, putative, unclassified
LOC_Os01g51950Os.46012.3.S1_x_at5/111+30187693..30193271retrotransposon protein, putative, unclassified
LOC_Os01g51950Os.27088.1.A1_x_at4/111+30187693..30193271retrotransposon protein, putative, unclassified
LOC_Os01g51960OsAffx.11569.1.S1_at11/111+30195755..30196102hypothetical protein
LOC_Os01g51970OsAffx.23757.1.S1_at8/111+30198011..30200500hypothetical protein
LOC_Os01g51980Os.14115.1.S1_at11/111+30201333..30204331Allinase, C-terminal domain containing protein, expressed
LOC_Os01g51990OsAffx.2307.1.S1_at8/111+30205282..30207127AN1-like Zinc finger family protein
LOC_Os01g52000OsAffx.915.1.S1_at11/111+30208648..30212949retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g52010Os.27958.1.S1_at11/111+30220876..30225299Allinase, C-terminal domain containing protein, expressed
LOC_Os01g52010Os.5347.1.S1_x_at10/111+30220876..30225299Allinase, C-terminal domain containing protein, expressed
LOC_Os01g52010Os.4801.1.S1_x_at3/111+30220876..30225299Allinase, C-terminal domain containing protein, expressed
LOC_Os01g52010OsAffx.914.1.S1_x_at2/111+30220876..30225299Allinase, C-terminal domain containing protein, expressed
LOC_Os01g52020NANA1+30227153..30229009hypothetical protein
LOC_Os01g52030Os.28489.1.S1_at8/111+30230953..30231637AN1-like Zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.915.1.S1_at--218--6033Chr07:2496236..2496260 (25 bp)
GAGAGGCCAACCGTGATGCATTTCA
LOC_Os07g05430
OsAffx.915.1.S1_at--107--10131Chr01:30209133..30209157 (25 bp)
TATGCTGCAGGCACTAGGGCACTGA
LOC_Os01g52000
OsAffx.915.1.S1_at--444--6893Chr07:2496120..2496144 (25 bp)
GTATACTGACAGTGACCTCGCCGGG
LOC_Os07g05430
OsAffx.915.1.S1_at--154--8133Chr07:2496101..2496120 (20 bp)
GGACTTGGATGATCGGCGCAGCACT
LOC_Os07g05430
OsAffx.915.1.S1_at--360--3412Chr03:2917268..2917292 (25 bp)
CAGCACTGGTGGAATGGCGTTCTAC
LOC_Os03g05850
OsAffx.915.1.S1_at--74--5533Chr07:2496015..2496039 (25 bp)
GAAAACTGTGGCACTATCGTCGTGT
LOC_Os07g05430
OsAffx.915.1.S1_at--227--4473Chr07:2495960..2495984 (25 bp)
GCCTGTCAAGCGCTCTGGTTAAGAG
LOC_Os07g05430
OsAffx.915.1.S1_at--912--2692Chr03:2917084..2917108 (25 bp)
AAGCTCTTCGTCGACAATAGGTCAG
LOC_Os03g05850
OsAffx.915.1.S1_at--949--9053Chr07:2495865..2495889 (25 bp)
TGCATTGATGAAGAACCCGGTGTTT
LOC_Os07g05430
OsAffx.915.1.S1_at--1133--33Chr07:2495822..2495846 (25 bp)
ATTGACACCCGTTATCACTTCATAC
LOC_Os07g05430
OsAffx.915.1.S1_at--489--3173Chr07:2495775..2495799 (25 bp)
AATTGTTGTGGAGTTCGTCCGGACT
LOC_Os07g05430
Target Sequence 
GAGAGGCCAACCGTGATGCATTTCAAGGCTGTGAAGCAAATTCTCAGATACATCAAGGGAACGATGGATTATGGTCTCGT
GTATGCTGCAGGCACTAGGGCACTGAAGATTACAGGGTATACTGACAGTGACCTCGCCGGGGACTTGGATGATCGGCGCA
GCACTGGTGGAATGGCGTTCTACATCAATCAGAGTCTGGTGGCGTGGAGCTCGCAAAAGCAGAAAACTGTGGCACTATCG
TCGTGTGAAGCCGAGTTCATGGCAGCCACGACGGCGGCCTGTCAAGCGCTCTGGTTAAGAGTGTTGCTAGCAGAAGTGGC
GGGAGTGGAGGAGAAAGCAGTGAAGCTCTTCGTCGACAATAGGTCAGCAATTGCATTGATGAAGAACCCGGTGTTTCATG
GGAGAAGTAAGCATATTGACACCCGTTATCACTTCATACGGGAGTGTGTGGATGGCGGGCAAATTGTTGTGGAGTTCGTC
CGGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.915.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis