Browse Element(s) Details


OsAffx.92.1.S1_at

Description gb:NM_197008.1
DB_XREF= gi:37535375
TID=OsAffx.92.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative transposase (OSJNBa0026O12.8), mRNA.
PROD=putative transposase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3374011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g277809/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g426909/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g302608/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g179202/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g363102/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33720Os.21896.1.S1_at11/1110+17464943..17470306dehydration-responsive protein, putative, expressed
LOC_Os10g33730Os.46535.1.S1_at11/1110+17469819..17473833PPR986-12, putative, expressed
LOC_Os10g33730Os.46535.2.S1_x_at10/1110+17469819..17473833PPR986-12, putative, expressed
LOC_Os10g33730Os.46535.2.S1_at9/1110+17469819..17473833PPR986-12, putative, expressed
LOC_Os10g33740OsAffx.92.1.S1_at11/1110+17491072..17495708transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g33740Os.47407.1.A1_at1/1110+17491072..17495708transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g33750OsAffx.31222.1.S1_at11/1110+17498005..17500496transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g33750OsAffx.31222.2.S1_at3/1110+17498005..17500496transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g33750OsAffx.31222.2.S1_x_at2/1110+17498005..17500496transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g33760Os.39129.1.S1_at11/1110+17519698..17521964NAC-domain containing protein 21/22, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.92.1.S1_at--670--854Chr12:16377103..16377127 (25 bp)
ATGGCAGAAAACCTCTCACACTTGT
LOC_Os12g27780
OsAffx.92.1.S1_at--650--7316Chr12:16377126..16377150 (25 bp)
GTGCTCTTCAATTGCCATTGGTTTG
LOC_Os12g27780
OsAffx.92.1.S1_at--921--9614Chr12:16377200..16377224 (25 bp)
TCATGCGTCAATCCTTCCAAAATTC
LOC_Os12g27780
OsAffx.92.1.S1_at--761--5434Chr12:16377225..16377249 (25 bp)
GAACCATTTGTTTTGTCTCATCAAG
LOC_Os12g27780
OsAffx.92.1.S1_at--267--9534Chr12:16377240..16377264 (25 bp)
TCTCATCAAGCGACACAGGTGTATT
LOC_Os12g27780
OsAffx.92.1.S1_at--247--3474Chr12:16377255..16377279 (25 bp)
CAGGTGTATTACATGCCGTACCCAT
LOC_Os12g27780
OsAffx.92.1.S1_at--359--4492Chr12:16377269..16377293 (25 bp)
GCCGTACCCATGTAAATCTGTGCAA
LOC_Os12g27780
OsAffx.92.1.S1_at--521--736Chr12:16377388..16377412 (25 bp)
ATGTTGTCCACTATTTCCAAGAAGA
LOC_Os12g27780
OsAffx.92.1.S1_at--294--6251Chr10:17491293..17491317 (25 bp)
GATGGTCTGTCTGGTAGTTTTGTAA
LOC_Os10g33740
OsAffx.92.1.S1_at--689--5952Chr03:23732290..23732314 (25 bp)
GAGCAAGTTGCCATCAGCAGGGATA
LOC_Os03g42690
OsAffx.92.1.S1_at--1109--8994Chr12:16377575..16377599 (25 bp)
TGAATCTTATTGCACTTCCTCATCT
LOC_Os12g27780
Target Sequence 
ATGGCAGAAAACCTCTCACACTTGTGCTCTTCAATTGCCATTGGTTTGACCCAAGCAAAGTGAGGTATACACCAAGATAT
GGTCTGGTTGAGGTTGCTCATGCGTCAATCCTTCCAAAATTCGAACCATTTGTTTTGTCTCATCAAGCGACACAGGTGTA
TTACATGCCGTACCCATGTAAATCTGTGCAAGACCTCACTAATTGGTGGGTTGTGTATAAGGTGCAGCCAATTGGTAGAC
TACAAGTACCCAATGATCAAGATTACAATTCTGTTCCTAATAGCAATGTTGTCCACTATTTCCAAGAAGATGGTCTGTCT
GGTAGTTTTGTAATCGATCTTGGTCAAGAACTCAACAATGATCCTGAGCAAGTTGCCATCAGCAGGGATACTGAAGATAT
TTGCAATGACAAGGACTTGAAGCTTCTCAATGGATCATCTATTCAAGATGAAGATGATGATGACGAGGATAATGAATCTT
ATTGCACTTCCTCATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.92.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis