Browse Element(s) Details


OsAffx.9397.1.S1_at

Description gb:NM_191503.1
DB_XREF= gi:34910089
GEN=B1100D10.20
TID=OsAffx.9397.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1100D10.20 (B1100D10.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5735010/11Diacylglycerol kinase catalytic domain family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57310Os.35231.1.S1_at10/111+33447347..33451219Rp1, putative
LOC_Os01g57324OsAffx.11634.2.S1_x_at11/111+33462681..33463463hypothetical protein
LOC_Os01g57324OsAffx.11634.1.S1_x_at8/111+33462681..33463463hypothetical protein
LOC_Os01g57340Os.35231.1.S1_at2/111+33467975..33471847Rp1, putative
LOC_Os01g57350Os.26990.1.S1_at11/111+33472776..33479375Diacylglycerol kinase catalytic domain family protein, expressed
LOC_Os01g57350OsAffx.9397.1.S1_at10/111+33472776..33479375Diacylglycerol kinase catalytic domain family protein, expressed
LOC_Os01g57350Os.47465.1.S1_at9/111+33472776..33479375Diacylglycerol kinase catalytic domain family protein, expressed
LOC_Os01g57360NANA1+33481126..33485168Acyltransferase family protein, expressed
LOC_Os01g57370OsAffx.23819.1.S1_at11/111+33495277..33499491cation channel family protein, expressed
LOC_Os01g57370OsAffx.23819.2.S1_x_at2/111+33495277..33499491cation channel family protein, expressed
LOC_Os01g57380OsAffx.2349.2.A1_at11/111+33501159..33501659hypothetical protein
LOC_Os01g57390OsAffx.11635.1.S1_x_at11/111+33504070..33504593LysM domain containing protein, expressed
LOC_Os01g57390OsAffx.11635.1.S1_at11/111+33504070..33504593LysM domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007205biological_processprotein kinase C activation
GO:0030148biological_processsphingolipid biosynthesis
GO:0004143molecular_functiondiacylglycerol kinase activity
GO:0017050molecular_functionD-erythro-sphingosine kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9397.1.S1_at--739--3592Chr05:23320846..23320868 (22 bp)
CATTCTGCCAGTTTGGTGGCTGATA
NONE
OsAffx.9397.1.S1_at--509--4131Chr01:33476472..33476984 (25 bp)
CGCTTTGATTTCTATTTTCCTGCTT
LOC_Os01g57350
OsAffx.9397.1.S1_at--660--171NONE
ATTTTCCTGCTTCCCAAGCAAGAGG
NONE
OsAffx.9397.1.S1_at--77--8171Chr01:33476436..33476460 (25 bp)
GGAAGTTTGGGTGTCTGGAAATCTT
LOC_Os01g57350
OsAffx.9397.1.S1_at--482--7711Chr01:33476428..33476452 (25 bp)
GGGTGTCTGGAAATCTTTGTTGGAA
LOC_Os01g57350
OsAffx.9397.1.S1_at--1101--6611Chr01:33476410..33476434 (25 bp)
GTTGGAAAATGATGCCTTCAGTCTT
LOC_Os01g57350
OsAffx.9397.1.S1_at--828--8851Chr01:33476401..33476425 (25 bp)
TGATGCCTTCAGTCTTAAAGATACT
LOC_Os01g57350
OsAffx.9397.1.S1_at--777--2331Chr01:33476385..33476409 (25 bp)
AAAGATACTCTTGCACTATTTCAGG
LOC_Os01g57350
OsAffx.9397.1.S1_at--878--9571Chr01:33476075..33476099 (25 bp)
TCTTCGCTCTTCTGTGGCGTGGCTG
LOC_Os01g57350
OsAffx.9397.1.S1_at--742--8471Chr01:33476061..33476085 (25 bp)
TGGCGTGGCTGTTTTTCTTATCGCC
LOC_Os01g57350
OsAffx.9397.1.S1_at--547--10531Chr01:33476047..33476071 (25 bp)
TTCTTATCGCCTTTTAGGGCTATGG
LOC_Os01g57350
Target Sequence 
CATTCTGCCAGTTTGGTGGCTGATATAGATATTGAGTCTGAGAAGTACAGGTGGATGGGAAGTGCACGCTTTGATTTCTA
TTTTCCTGCTTCCCAAGCAAGAGGAAGTTTGGGTGTCTGGAAATCTTTGTTGGAAAATGATGCCTTCAGTCTTAAAGATA
CTCTTGCACTATTTCAGGCTTTGGTTCGCATAATGAACTTGAGAAAATACTACGGAAGTATTCAGTATGTTCCTGCCCCC
GGCTATGAGGCATATGGAGATGTCGTCAAGCAGGTTGAGAATTGCACTGTAGAATGCCAAGAACAGATTGGGAAGTCTTT
GTGTTCTTATCAAGGTCCTTCCGTTGAGTTTCAAGGTTCAGAATGGAGATCCCTTGATGGTCCATTTGTGTCTATTTGGA
TCAACAACGTGCAATGGGCTGCTGAGAGTATCATGGCAGCTCCTGGGGCCAAGGTAATTGAATTCTTCGCTCTTCTGTGG
CGTGGCTGTTTTTCTTATCGCCTTTTAGGGCTATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9397.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis