Browse Element(s) Details


OsAffx.9656.1.S1_x_at

Description tigr:9638.m02941
TID=OsAffx.9656.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g336103/11hypothetical protein
LOC_Os01g688502/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33560NANA10+17365848..17369399retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g33570NANA10+17371838..17376033retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g33600OsAffx.18505.1.S1_at11/1110+17386921..17387154hypothetical protein
LOC_Os10g33610OsAffx.9656.1.S1_x_at3/1110+17390836..17391330hypothetical protein
LOC_Os10g33610OsAffx.9656.3.S1_x_at2/1110+17390836..17391330hypothetical protein
LOC_Os10g33620Os.3046.1.S1_at11/1110+17393077..17395609Ubiquitin family protein, expressed
LOC_Os10g33630Os.3042.1.S1_at10/1110+17397043..17400163Adaptin ear-binding coat-associated protein 2, putative, expressed
LOC_Os10g33634NANA10+17402021..17402128NA
LOC_Os10g33640OsAffx.30659.1.S1_at11/1110+17403206..17406409Protein kinase domain containing protein, expressed
LOC_Os10g33650Os.46666.2.S1_x_at11/1110+17409814..17415110Casein kinase I, epsilon isoform, putative, expressed
LOC_Os10g33650Os.46666.1.S1_at11/1110+17409814..17415110Casein kinase I, epsilon isoform, putative, expressed
LOC_Os10g33650Os.52991.1.A1_at8/1110+17409814..17415110Casein kinase I, epsilon isoform, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9656.1.S1_x_at--226--2591Chr10:17390995..17391019 (25 bp)
AACGATATTCCCGACCAGCGAAGGG
LOC_Os10g33610
OsAffx.9656.1.S1_x_at--335--1711Chr10:17391008..17391032 (25 bp)
ACCAGCGAAGGGACGTCGACATCGT
LOC_Os10g33610
OsAffx.9656.1.S1_x_at--69--2771Chr10:17391167..17391191 (25 bp)
AAGACGCGGCTAATGACGAGGTCAT
LOC_Os10g33610
OsAffx.9656.1.S1_x_at--243--1311Chr10:17391330..17391354 (25 bp)
AGATGGTCTGTGTGTGGACGCGACT
NONE
OsAffx.9656.1.S1_x_at--354--8671Chr10:17391340..17391364 (25 bp)
TGTGTGGACGCGACTGCAGCGTCGA
NONE
OsAffx.9656.1.S1_x_at--599--1971Chr10:17391352..17391477 (25 bp)
ACTGCAGCGTCGAGGCGGCGTCGGT
NONE
OsAffx.9656.1.S1_x_at--74--4711Chr10:17391467..17391491 (25 bp)
GCGGCGTCGGTTGGCGTCAAGCGCT
NONE
OsAffx.9656.1.S1_x_at--839--7911Chr10:17391475..17391499 (25 bp)
GGTTGGCGTCAAGCGCTGGTGACAG
NONE
OsAffx.9656.1.S1_x_at--1045--3891Chr10:17391490..17391514 (25 bp)
CTGGTGACAGGTGGACGACGACACT
NONE
OsAffx.9656.1.S1_x_at--536--3472Chr10:17391497..17391521 (25 bp)
CAGGTGGACGACGACACTGTGCACG
NONE
OsAffx.9656.1.S1_x_at--214--8112Chr10:17391502..17391526 (25 bp)
GGACGACGACACTGTGCACGGGCCC
NONE
Target Sequence 
AACGATATTCCCGACCAGCGAAGGGACGTCGACATCGTCCGTGGCGGCGAAGCTGCAGAGGAAGAGAGGCAGCGGGTGGC
CTCGGCGAAGACGCGGCTAATGACGAGGTCATTGAGGATGGAGATGGGGGCCTTGTCAGTGGAGGTAGAGACAGAGGGAA
GCCTGTTGAGGGAGACGGCGGCGCTACGGGCACAAGCCGAGGGCGTCGTGGAGGAAGGGAGGCATGGGCGGGGCGAGGAG
GGAGGAGATGAGATGGTCTGTGTGTGGACGCGACTGCAGCGTCGAGGCGGCGTCGGTTGGCGTCAAGCGCTGGTGACAGG
TGGACGACGACACTGTGCACGGGCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9656.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis