Browse Element(s) Details


OsAffx.983.1.S1_at

Description gb:AB099525.1
DB_XREF= gi:47232547
GEN=OsPolL
TID=OsAffx.983.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OsPolL mRNA for DNA polymerase lambda, complete cds.
PROD=DNA polymerase lambda
FL= gb:AB099525.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1302010/11DNA polymerase lambda, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12980OsAffx.27595.1.S1_at10/116+7101965..7105822Cyclin, N-terminal domain containing protein
LOC_Os06g12990OsAffx.27596.1.S1_at11/116+7118075..7119404expressed protein
LOC_Os06g12990Os.13757.1.S1_at11/116+7118075..7119404expressed protein
LOC_Os06g13000OsAffx.27597.1.S1_at11/116+7120121..7122027Ankyrin repeat protein, chloroplast precursor, putative, expressed
LOC_Os06g13010OsAffx.27598.1.S1_at10/116+7124667..7126893RNase H domain-containing protein, putative, expressed
LOC_Os06g13020OsAffx.983.1.S1_at10/116+7127121..7132516DNA polymerase lambda, putative, expressed
LOC_Os06g13030Os.18748.1.S1_at7/116+7132792..7139004LIM domain containing protein, expressed
LOC_Os06g13040OsAffx.15401.1.S1_at10/116+7143532..7145046Glycosyl hydrolases family 16 protein, expressed
LOC_Os06g13050OsAffx.27599.1.S1_at11/116+7147962..7157823Peroxidase family protein, expressed
LOC_Os06g13050Os.26702.1.A1_s_at4/116+7147962..7157823Peroxidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016449molecular_functionlambda DNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.983.1.S1_at--221--5231Chr06:7129979..7130106 (25 bp)
GAATACCCCGACATGAGGTTAGTGA
LOC_Os06g13020
OsAffx.983.1.S1_at--511--2811Chr06:7129934..7129958 (25 bp)
AAGTTGGGACTGATATCTTGCCTGG
LOC_Os06g13020
OsAffx.983.1.S1_at--198--5511Chr06:7129456..7129480 (25 bp)
GAAAATCTTCTTGTGGTGACATGGA
LOC_Os06g13020
OsAffx.983.1.S1_at--1090--151Chr06:7129430..7129454 (25 bp)
ATTATTATCACTCATCCTGATGGTG
LOC_Os06g13020
OsAffx.983.1.S1_at--428--5571Chr06:7129060..7129081 (22 bp)
GAAAGTCATGTAGGCTTTTTACCAA
LOC_Os06g13020
OsAffx.983.1.S1_at--691--10251Chr06:7128873..7129057 (25 bp)
TTTGTTCAGCGCTTGAAGGACATCA
LOC_Os06g13020
OsAffx.983.1.S1_at--653--7651Chr06:7128999..7129023 (25 bp)
GGGAGGATCTTATTTTCAGCATACA
LOC_Os06g13020
OsAffx.983.1.S1_at--683--3391Chr06:7128988..7129007 (20 bp)
CAGCATACACAGCATTGAGGGAACT
LOC_Os06g13020
OsAffx.983.1.S1_at--908--10751Chr06:7128220..7128244 (25 bp)
TTGACACATATTTTGGTCTTTGCAC
LOC_Os06g13020
OsAffx.983.1.S1_at--469--9071Chr06:7127765..7127789 (25 bp)
TGCTTGGACTGGCAATGATGTTCTG
LOC_Os06g13020
OsAffx.983.1.S1_at--313--8211NONE
GGCAATGATGTTCTGAATCGACGAT
NONE
Target Sequence 
GAATACCCCGACATGAGGTTAGTGAGATGGAGAAGCTTTTGCAAGAAGTTGGGACTGATATCTTGCCTGGGGTGATAATT
GTATGTGGGGGATCATACAGACGTGGAAAATCTTCTTGTGGTGACATGGATATTATTATCACTCATCCTGATGGTGAAAG
TCATGTAGGCTTTTTACCAAAATTTGTTCAGCGCTTGAAGGACATCAATTTTTTGAGGGAGGATCTTATTTTCAGCATAC
ACAGCATTGAGGGAACTGATTGTGGAGTTGACACATATTTTGGTCTTTGCACATATCCTGGGCGTGAGCTGCGCCATCGC
ATCGACCTCAAGGTATACCCAAGGAACAGACATGCATTTGGGCTGCTTGCTTGGACTGGCAATGATGTTCTGAATCGACG
AT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.983.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis