Browse Element(s) Details


OsAffx.985.2.S1_at

Description gb:NM_191035.1
DB_XREF= gi:34909153
GEN=P0468B07.20
TID=OsAffx.985.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) receptor protein kinase-like (P0468B07.20), mRNA.
PROD=receptor protein kinase-like
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5955011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59480OsAffx.11662.1.S1_at11/111+34728561..34729955hypothetical protein
LOC_Os01g59490Os.27966.1.S1_a_at11/111+34733225..34736049FAD-dependent oxidoreductase family protein, putative, expressed
LOC_Os01g59500Os.37510.1.S1_at11/111+34736075..34739419U3 small nucleolar RNA-associated protein 11, putative, expressed
LOC_Os01g59500OsAffx.11663.1.S1_x_at11/111+34736075..34739419U3 small nucleolar RNA-associated protein 11, putative, expressed
LOC_Os01g59500OsAffx.11663.1.S1_at10/111+34736075..34739419U3 small nucleolar RNA-associated protein 11, putative, expressed
LOC_Os01g59510Os.33770.1.S1_at11/111+34739702..34743837ribonuclease III family protein, putative, expressed
LOC_Os01g59510Os.33770.1.S1_s_at11/111+34739702..34743837ribonuclease III family protein, putative, expressed
LOC_Os01g59520Os.52792.1.S1_at11/111+34743963..34747179expressed protein
LOC_Os01g59530Os.2216.1.S1_at11/111+34747839..34750523Calmodulin, putative, expressed
LOC_Os01g59530OsAffx.31569.1.S1_x_at1/111+34747839..34750523Calmodulin, putative, expressed
LOC_Os01g59540NANA1+34752667..34753898GRF zinc finger family protein
LOC_Os01g59550OsAffx.985.7.S1_x_at11/111+34754561..34763164Protein kinase domain containing protein, expressed
LOC_Os01g59550OsAffx.985.2.S1_at11/111+34754561..34763164Protein kinase domain containing protein, expressed
LOC_Os01g59550OsAffx.985.3.S1_x_at2/111+34754561..34763164Protein kinase domain containing protein, expressed
LOC_Os01g59560OsAffx.985.3.S1_x_at11/111+34764111..34771226Protein kinase domain containing protein, expressed
LOC_Os01g59560OsAffx.985.7.S1_x_at2/111+34764111..34771226Protein kinase domain containing protein, expressed
LOC_Os01g59570Os.18744.1.S1_at11/111+34772599..34780847Protein kinase domain containing protein, expressed
LOC_Os01g59570OsAffx.985.1.S1_x_at1/111+34772599..34780847Protein kinase domain containing protein, expressed
LOC_Os01g59570Os.53116.1.S1_at1/111+34772599..34780847Protein kinase domain containing protein, expressed
LOC_Os01g59580OsAffx.985.1.S1_x_at11/111+34785572..34792859Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.985.2.S1_at--492--11Chr01:34755476..34755500 (25 bp)
CTGGAGTTCCAATAGTAAGTAACGA
LOC_Os01g59550
OsAffx.985.2.S1_at--430--8031Chr01:34755474..34755498 (25 bp)
GGAGTTCCAATAGTAAGTAACGAGT
LOC_Os01g59550
OsAffx.985.2.S1_at--1012--6671Chr01:34755471..34755495 (25 bp)
GTTCCAATAGTAAGTAACGAGTGTA
LOC_Os01g59550
OsAffx.985.2.S1_at--733--7051Chr01:34755458..34755482 (25 bp)
GTAACGAGTGTATATCAGGTGGCAT
LOC_Os01g59550
OsAffx.985.2.S1_at--956--9791Chr01:34755457..34755481 (25 bp)
TAACGAGTGTATATCAGGTGGCATC
LOC_Os01g59550
OsAffx.985.2.S1_at--203--2591Chr01:34755456..34755480 (25 bp)
AACGAGTGTATATCAGGTGGCATCA
LOC_Os01g59550
OsAffx.985.2.S1_at--55--4071Chr01:34755454..34755478 (25 bp)
CGAGTGTATATCAGGTGGCATCACA
LOC_Os01g59550
OsAffx.985.2.S1_at--1080--6111Chr01:34755453..34755477 (25 bp)
GAGTGTATATCAGGTGGCATCACAG
LOC_Os01g59550
OsAffx.985.2.S1_at--277--10131Chr01:34755446..34755470 (25 bp)
TATCAGGTGGCATCACAGAATTAAG
LOC_Os01g59550
OsAffx.985.2.S1_at--1108--9631Chr01:34755444..34755468 (25 bp)
TCAGGTGGCATCACAGAATTAAGTT
LOC_Os01g59550
OsAffx.985.2.S1_at--311--7731Chr01:34755441..34755465 (25 bp)
GGTGGCATCACAGAATTAAGTTATT
LOC_Os01g59550
Target Sequence 
CTGGAGTTCCAATAGTAAGTAACGAGTGTATATCAGGTGGCATCACAGAATTAAGTTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.985.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis