Browse Element(s) Details


OsAffx.9946.1.S1_at

Description gb:NM_188331.1
DB_XREF= gi:34903745
TID=OsAffx.9946.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g107294/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10690Os.24974.1.S1_a_at11/111+5715703..5720986expressed protein
LOC_Os01g10700OsAffx.10999.1.S1_x_at11/111+5724128..5726558D-mannose binding lectin family protein
LOC_Os01g10710OsAffx.23191.1.S1_at11/111+5728585..5731122D-mannose binding lectin family protein
LOC_Os01g10720NANA1+5733101..5737553retrotransposon protein, putative, unclassified
LOC_Os01g10729OsAffx.9946.1.S1_at4/111+5741029..5741364NA
LOC_Os01g10740OsAffx.22126.1.S1_at5/111+5745671..5746072hypothetical protein
LOC_Os01g10750Os.45990.2.S1_x_at8/111+5746869..5747237hypothetical protein
LOC_Os01g10760OsAffx.11001.1.S1_at11/111+5747505..5747837hypothetical protein
LOC_Os01g10770NANA1+5754293..5755409hypothetical protein
LOC_Os01g10780OsAffx.23193.1.S1_at11/111+5756620..5757036hypothetical protein
LOC_Os01g10790Os.1402.1.S1_at10/111+5757288..5761404WD-repeat protein 53, putative, expressed
LOC_Os01g10800Os.28976.1.S1_at11/111+5761454..5764704pentatricopeptide, putative, expressed
LOC_Os01g10810OsAffx.11002.1.S1_at11/111+5765013..5766263Rho termination factor, N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9946.1.S1_at--456--9232Chr03:2423615..2423639 (23 bp)
TCCAGTTGTTGCAGTTCCATTTGAG
NONE
OsAffx.9946.1.S1_at--1078--3431Chr01:5741796..5741819 (24 bp)
CAGTTGTTGCAGTTCCATTTGAGGA
NONE
OsAffx.9946.1.S1_at--53--6651Chr01:5741796..5741817 (22 bp)
GTTGTTGCAGTTCCATTTGAGGATC
NONE
OsAffx.9946.1.S1_at--265--6671NONE
GTTGCAGTTCCATTTGAGGATCTTG
NONE
OsAffx.9946.1.S1_at--1156--5011NONE
GCAGTTCCATTTGAGGATCTTGGGA
NONE
OsAffx.9946.1.S1_at--855--6691NONE
GTTCCATTTGAGGATCTTGGGAGAT
NONE
OsAffx.9946.1.S1_at--165--4331NONE
CCATTTGAGGATCTTGGGAGATGCC
NONE
OsAffx.9946.1.S1_at--952--10251Chr01:5741110..5741130 (21 bp)
TTTGAGGATCTTGGGAGATGCCAGA
LOC_Os01g10729
OsAffx.9946.1.S1_at--388--7111Chr01:5741084..5741108 (25 bp)
GTCTTTATGGGAGCCAAGTAGCCAA
LOC_Os01g10729
OsAffx.9946.1.S1_at--775--4391Chr01:5741072..5741096 (25 bp)
GCCAAGTAGCCAACCATACCATGTT
LOC_Os01g10729
OsAffx.9946.1.S1_at--845--2831Chr01:5741069..5741093 (25 bp)
AAGTAGCCAACCATACCATGTTTGA
LOC_Os01g10729
Target Sequence 
TCCAGTTGTTGCAGTTCCATTTGAGGATCTTGGGAGATGCCAGATGTCTTTATGGGAGCCAAGTAGCCAACCATACCATG
TTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9946.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis