Browse Element(s) Details


Os.10019.1.S1_a_at

Description gb:AY374514.1
DB_XREF= gi:36956964
GEN=MyoVIIIA2
TID=Os.10019.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10019 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) myosin heavy chain class VIII A2 protein (MyoVIIIA2) mRNA, complete cds.
PROD=myosin heavy chain class VIII A2 protein
FL= gb:AY374514.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3756011/11Myosin head family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37520Os.40360.1.S1_x_at1/117+22463955..22465440hypothetical protein
LOC_Os07g37530Os.46485.1.S1_at9/117+22472867..22475482Major Facilitator Superfamily protein, expressed
LOC_Os07g37530OsAffx.10993.2.S1_x_at1/117+22472867..22475482Major Facilitator Superfamily protein, expressed
LOC_Os07g37530OsAffx.10993.1.S1_x_at1/117+22472867..22475482Major Facilitator Superfamily protein, expressed
LOC_Os07g37540OsAffx.5562.1.S1_at11/117+22484437..22484763hypothetical protein
LOC_Os07g37550Os.28216.2.S1_s_at11/117+22485740..22487030Chlorophyll a-b binding protein of LHCII type III, chloroplast precursor, putative, expressed
LOC_Os07g37550Os.28216.2.S1_a_at8/117+22485740..22487030Chlorophyll a-b binding protein of LHCII type III, chloroplast precursor, putative, expressed
LOC_Os07g37550Os.28216.3.S1_x_at3/117+22485740..22487030Chlorophyll a-b binding protein of LHCII type III, chloroplast precursor, putative, expressed
LOC_Os07g37560Os.10019.1.S1_a_at11/117+22487133..22496733Myosin head family protein, expressed
LOC_Os07g37570Os.5422.1.S1_s_at11/117+22504860..22507507expressed protein
LOC_Os07g37570OsAffx.16599.1.S1_at11/117+22504860..22507507expressed protein
LOC_Os07g37580Os.10443.1.S1_at8/117+22511401..22517062Diacylglycerol kinase catalytic domain family protein, expressed
LOC_Os07g37590Os.35344.18.S1_x_at11/117+22519597..22521364hypothetical protein
LOC_Os07g37590Os.35344.3.S1_x_at9/117+22519597..22521364hypothetical protein
LOC_Os07g37590OsAffx.22940.5.S1_x_at3/117+22519597..22521364hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0030048biological_processactin filament-based movement
GO:0009504cellular_componentcell plate
GO:0009524cellular_componentphragmoplast
GO:0016459cellular_componentmyosin
GO:0003774molecular_functionmotor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10019.1.S1_a_at--686--4771Chr07:22487948..22487972 (25 bp)
GCTGCTCCAATGCATGCTCATTATG
LOC_Os07g37560
Os.10019.1.S1_a_at--824--8991Chr07:22487919..22487943 (25 bp)
TGAAGATACGTCGACCGGGACCCAT
LOC_Os07g37560
Os.10019.1.S1_a_at--1054--7751Chr07:22487902..22487926 (25 bp)
GGACCCATACCCCTGAAGGGACAGA
LOC_Os07g37560
Os.10019.1.S1_a_at--309--371Chr07:22487869..22487893 (25 bp)
ATCAAAACCACAACTCTGAGGCTAG
LOC_Os07g37560
Os.10019.1.S1_a_at--49--8311Chr07:22487850..22487874 (25 bp)
GGCTAGAGTGGCAGCACCGAATTCA
LOC_Os07g37560
Os.10019.1.S1_a_at--1135--10091Chr07:22487823..22487847 (25 bp)
TAGGCGGATAAACGCGGTGAACCAC
LOC_Os07g37560
Os.10019.1.S1_a_at--746--7751Chr07:22487808..22487832 (25 bp)
GGTGAACCACCTAGCCAAGGAGTTT
LOC_Os07g37560
Os.10019.1.S1_a_at--1004--10731Chr07:22487764..22487788 (25 bp)
TTGAAGACGATGCTGGCTTCCTTGT
LOC_Os07g37560
Os.10019.1.S1_a_at--498--8291Chr07:22487750..22487774 (25 bp)
GGCTTCCTTGTTGCCGTGAAGTCCG
LOC_Os07g37560
Os.10019.1.S1_a_at--1112--8971Chr07:22487707..22487731 (25 bp)
TGAACCCAGACGATGAACTCCGAAA
LOC_Os07g37560
Os.10019.1.S1_a_at--669--2352Chr03:13754838..13754857 (20 bp)
AAAGCTCAAGGACCGATTCGCGACA
NONE
Target Sequence 
GCTGCTCCAATGCATGCTCATTATGATTCTGAAGATACGTCGACCGGGACCCATACCCCTGAAGGGACAGAGTTCAAATA
TCAAAACCACAACTCTGAGGCTAGAGTGGCAGCACCGAATTCAGATAGGCGGATAAACGCGGTGAACCACCTAGCCAAGG
AGTTTGAGGACAGGCGGCAGGTGTTTGAAGACGATGCTGGCTTCCTTGTTGCCGTGAAGTCCGGACAAGTTGGTCCAAAC
ATGAACCCAGACGATGAACTCCGAAAGCTCAAGGACCGATTCGCGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10019.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis