Browse Element(s) Details


Os.10057.1.S1_at

Description gb:AK103368.1
DB_XREF= gi:32988577
TID=Os.10057.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10057 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033126P14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033126P14, full insert sequence.
FL= gb:AK103368.1 gb:AK060811.1 gb:AK101466.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4237011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42310Os.26556.1.S2_at11/1112+26273263..26282197kelch repeat-containing serine/threonine phosphoesterase family protein, putative, expressed
LOC_Os12g42310Os.26556.1.S1_at11/1112+26273263..26282197kelch repeat-containing serine/threonine phosphoesterase family protein, putative, expressed
LOC_Os12g42319OsAffx.9066.1.S1_x_at1/1112+26284523..26285551NA
LOC_Os12g42319Os.48426.1.A1_at1/1112+26284523..26285551NA
LOC_Os12g42330OsAffx.20088.1.S1_at11/1112+26286339..26288393hypothetical protein
LOC_Os12g42340OsAffx.32155.1.S1_x_at11/1112+26289786..26293447F-box domain containing protein
LOC_Os12g42340OsAffx.32155.1.S1_at11/1112+26289786..26293447F-box domain containing protein
LOC_Os12g42360NANA12+26297004..26297426hypothetical protein
LOC_Os12g42370Os.10057.1.S1_at11/1112+26300655..26304551expressed protein
LOC_Os12g42370Os.7867.1.S1_x_at1/1112+26300655..26304551expressed protein
LOC_Os12g42380Os.9126.1.S2_at6/1112+26305856..26308219expressed protein
LOC_Os12g42390Os.9126.1.S2_at1/1112+26311474..26311860expressed protein
LOC_Os12g42400Os.22707.1.S1_at11/1112+26313290..26317662CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os12g42410OsAffx.32156.1.S1_at11/1112+26325237..26326071hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10057.1.S1_at--105--1431Chr12:26301186..26301210 (25 bp)
AGAAACCAGCTGTTAACCTCTCTGC
LOC_Os12g42370
Os.10057.1.S1_at--194--1651Chr12:26301151..26301175 (25 bp)
AGCGACAAGACCTAGTACCCTGATG
LOC_Os12g42370
Os.10057.1.S1_at--947--2011Chr12:26301110..26301134 (25 bp)
ACTACACTTGGCACACATGGGCAAT
LOC_Os12g42370
Os.10057.1.S1_at--31--8231Chr12:26301091..26301115 (25 bp)
GGCAATAAGGTCTTTGCTCCCTTGA
LOC_Os12g42370
Os.10057.1.S1_at--165--10771Chr12:26301070..26301094 (25 bp)
TTGAGTTTTCTGGAGACCCTGACCT
LOC_Os12g42370
Os.10057.1.S1_at--558--1391Chr12:26301057..26301081 (25 bp)
AGACCCTGACCTTTGCATATGCAAA
LOC_Os12g42370
Os.10057.1.S1_at--801--2751Chr12:26301029..26301053 (25 bp)
AAGAAATCTGGTTTACGCCTGCCGT
LOC_Os12g42370
Os.10057.1.S1_at--998--2231Chr12:26300968..26300992 (25 bp)
AAATTGCCGAGGCTTGCTTGCTCTG
LOC_Os12g42370
Os.10057.1.S1_at--784--4891Chr12:26300883..26300907 (25 bp)
GCTTTTGTTCCCCTGGCATTATATA
LOC_Os12g42370
Os.10057.1.S1_at--83--6511Chr12:26300837..26300861 (25 bp)
GATATGTGTACTGTTTGTTCCTCCA
LOC_Os12g42370
Os.10057.1.S1_at--667--10371Chr12:26300775..26300799 (25 bp)
TTTTCACCAGTTTTGTTCGTCTCAT
LOC_Os12g42370
Target Sequence 
AGAAACCAGCTGTTAACCTCTCTGCCGTCAGTGCAAGCGACAAGACCTAGTACCCTGATGGCATATTGTGTTTTCAACTA
CACTTGGCACACATGGGCAATAAGGTCTTTGCTCCCTTGAGTTTTCTGGAGACCCTGACCTTTGCATATGCAAAATCAAG
AAATCTGGTTTACGCCTGCCGTGTTGAGTGGTAGGGGAAATTTTGCCGCCTGTGAACAAAATTGCCGAGGCTTGCTTGCT
CTGGTGGATGCGAGATCGGAGACGAAAGCTATATAGAAGAAGAAAATTTTCTGTTTTATTTCAGCTTTTGTTCCCCTGGC
ATTATATACAGCCAGTGTGAATTGTGTGTGATATGTGTACTGTTTGTTCCTCCATGAATGATCAAGAAATTAACATAGAA
ATTGTAATAACTTTTCACCAGTTTTGTTCGTCTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10057.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis