Browse Element(s) Details


Os.10077.2.S1_at

Description gb:AK104969.1
DB_XREF= gi:32990178
TID=Os.10077.2
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10077 (NCBI UniGene Cluster)
UG_TITLE=Unknown mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-121-E11, full insert sequence.
FL= gb:AK104969.1 gb:AK072619.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2637010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26320Os.55769.1.S1_at11/112+15453155..15454310Fasciclin-like arabinogalactan protein 10 precursor, putative, expressed
LOC_Os02g26330NANA2+15461305..15461963expressed protein
LOC_Os02g26349Os.49535.1.A1_at11/112+15462135..15471529transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26349Os.39411.1.A1_at1/112+15462135..15471529transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26349OsAffx.6362.1.S1_at1/112+15462135..15471529transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26349Os.45957.4.S1_x_at1/112+15462135..15471529transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26370Os.10077.1.S1_at11/112+15476870..15480056expressed protein
LOC_Os02g26370Os.10077.2.S1_at10/112+15476870..15480056expressed protein
LOC_Os02g26380OsAffx.24432.1.S1_at11/112+15486938..15487410hypothetical protein
LOC_Os02g26390Os.9623.1.A1_at11/112+15490019..15492569expressed protein
LOC_Os02g26400OsAffx.12202.1.S1_at11/112+15496752..15501303nuclease, EndA/NucM family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0031225cellular_componentanchored to membrane
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10077.2.S1_at--928--8071Chr02:15477236..15477260 (25 bp)
GGAGCTTACTACTAGCAAAGTGCAG
LOC_Os02g26370
Os.10077.2.S1_at--518--3391Chr02:15477179..15477203 (25 bp)
CAGCAGTTCTTTTCTGGAATTACGC
LOC_Os02g26370
Os.10077.2.S1_at--940--3131Chr02:15477162..15477186 (25 bp)
AATTACGCTGAGGAGCATTTTGCAG
LOC_Os02g26370
Os.10077.2.S1_at--696--5071Chr02:15477141..15477165 (25 bp)
GCAGCGACTTCTTTCTGGGTTGAAT
LOC_Os02g26370
Os.10077.2.S1_at--536--7731Chr02:15477060..15477084 (25 bp)
GGTGGTTGTCTGTTTTTCAACTGCA
LOC_Os02g26370
Os.10077.2.S1_at--706--10331Chr02:15477046..15477070 (25 bp)
TTTCAACTGCATGGAGTCTCTTGGC
LOC_Os02g26370
Os.10077.2.S1_at--468--6091Chr02:15477033..15477057 (25 bp)
GAGTCTCTTGGCAGGTTTACGGGCT
LOC_Os02g26370
Os.10077.2.S1_at--198--1391Chr02:15476991..15477015 (25 bp)
AGACTGCTAGGCGTTTTGTTCACTC
LOC_Os02g26370
Os.10077.2.S1_at--639--3811Chr02:15476969..15476993 (25 bp)
CTCCTGCCAGGATCTCTATTGTAAT
LOC_Os02g26370
Os.10077.2.S1_at--944--4931Chr02:15476925..15476949 (25 bp)
GCATATTCGCAATGCCTAATAGTGT
LOC_Os02g26370
Os.10077.2.S1_at--496--71Chr02:15476869..15476893 (25 bp)
ATTGCATATTCTTCTGAGCTCTTTA
NONE
Target Sequence 
GGAGCTTACTACTAGCAAAGTGCAGAAAGTTTAGAAGGTCTGTTCACATGATAAAACCAGCAGTTCTTTTCTGGAATTAC
GCTGAGGAGCATTTTGCAGCGACTTCTTTCTGGGTTGAATGTGTAGCTAAGCAAATGTGTGGAGAAGTTCGATTTGTTAG
ATCTTGGGGGCGTAAAGGTGGTTGTCTGTTTTTCAACTGCATGGAGTCTCTTGGCAGGTTTACGGGCTGCGCTGGAAGGG
AATTGAGACTGCTAGGCGTTTTGTTCACTCCTGCCAGGATCTCTATTGTAATCCTATGTTATGACAAAATTGCATATTCG
CAATGCCTAATAGTGTTTTTTTTTTTNNNNNCNNNNNNGAAATATGCAAATTGCATATTCTTCTGAGCTCTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10077.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis