Browse Element(s) Details


Os.10104.1.S1_at

Description gb:AK109531.1
DB_XREF= gi:32994740
TID=Os.10104.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10104 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-118-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-118-C03, full insert sequence.
FL= gb:AK109531.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4098011/11Uncharacterized BCR, COG1963 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40930Os.18963.1.S1_a_at11/114+24077363..24082114DNA binding protein GT-1, putative, expressed
LOC_Os04g40940Os.6028.1.S1_at10/114+24082347..24084087Mitotic spindle checkpoint protein MAD2, putative, expressed
LOC_Os04g40950Os.28374.1.S1_at11/114+24086354..24090052Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3, putative, expressed
LOC_Os04g40950Os.57475.1.S1_x_at1/114+24086354..24090052Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3, putative, expressed
LOC_Os04g40960OsAffx.14225.1.S1_x_at11/114+24090485..24091054F-box domain containing protein
LOC_Os04g40960OsAffx.14225.1.S1_at11/114+24090485..24091054F-box domain containing protein
LOC_Os04g40970OsAffx.26412.1.S1_at11/114+24093561..24100010ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os04g40980Os.10104.1.S1_at11/114+24102280..24106649Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os04g40990Os.26687.1.S1_at11/114+24106676..24109146Malate synthase, glyoxysomal, putative, expressed
LOC_Os04g41000NANA4+24115079..24115509hypothetical protein
LOC_Os04g41010NANA4+24116449..24116667hypothetical protein
LOC_Os04g41020Os.54586.1.S1_at11/114+24120514..24124686Kelch motif family protein, expressed
LOC_Os04g41030Os.26743.1.S1_at11/114+24128996..24131777Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10104.1.S1_at--81--5651Chr04:24104302..24104326 (25 bp)
GACAGCGCTTGCAGTGGCCATAGGA
LOC_Os04g40980
Os.10104.1.S1_at--845--2731Chr04:24104331..24104355 (25 bp)
AAGAAGGCTATCGTAGCGCCACCTT
LOC_Os04g40980
Os.10104.1.S1_at--833--4151Chr04:24104347..24104371 (25 bp)
CGCCACCTTTGCAACTTCAGTAATT
LOC_Os04g40980
Os.10104.1.S1_at--834--9071Chr04:24104908..24104932 (25 bp)
TGCTTTTGGAGTTCGCTTACATGCT
LOC_Os04g40980
Os.10104.1.S1_at--819--111Chr04:24105607..24105631 (25 bp)
ATTCTTGGACACACAGTTCCTCAGG
LOC_Os04g40980
Os.10104.1.S1_at--413--1211Chr04:24105621..24106125 (25 bp)
AGTTCCTCAGGTTGTGGCCGGTTGC
LOC_Os04g40980
Os.10104.1.S1_at--614--8451Chr04:24106115..24106139 (25 bp)
TGGCCGGTTGCATCATTGGAATCCT
LOC_Os04g40980
Os.10104.1.S1_at--904--3031Chr04:24106134..24106158 (25 bp)
AATCCTTATAGCTGTTGTTATGCGC
LOC_Os04g40980
Os.10104.1.S1_at--688--771Chr04:24106167..24106191 (25 bp)
ATGGAGTTCTTAGACACGCATTACT
LOC_Os04g40980
Os.10104.1.S1_at--201--9911Chr04:24106188..24106212 (25 bp)
TACTCGTAGGTATTTGCTTGATCAC
LOC_Os04g40980
Os.10104.1.S1_at--808--5512Chr04:24106246..24106270 (25 bp)
GAAAACTCAAATCTCCTCTTGGATG
LOC_Os04g40980
Target Sequence 
GACAGCGCTTGCAGTGGCCATAGGAATCCAAGAAGGCTATCGTAGCGCCACCTTTGCAACTTCAGTAATTATTGCATGTG
TGGTGATGCATGATGCTTTTGGAGTTCGCTTACATGCTGGGAAGCAGGCAGAGGTATTGAATCAAATTGTGTACGAGCTA
CCAGAAGAGCATCCATTATCAGAGACAAAGCCATTGCGTGAAATTCTTGGACACACAGTTCCTCAGGTTGTGGCCGGTTG
CATCATTGGAATCCTTATAGCTGTTGTTATGCGCTTAGCTCTATGGAGTTCTTAGACACGCATTACTCGTAGGTATTTGC
TTGATCACCTCATATCGCATCGCTGATGAGTTGTGAAGCATGAAAACTCAAATCTCCTCTTGGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10104.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis