Browse Element(s) Details


Os.10132.1.S1_at

Description gb:AY129070.1
DB_XREF= gi:27461707
GEN=Lon1
TID=Os.10132.1
CNT=74
FEA=FLmRNA
TIER=FL+Stack
STK=21
UG=Os.10132 (NCBI UniGene Cluster)
DEF=Oryza sativa (indica cultivar-group) Lon protease (Lon1) mRNA, complete cds.
PROD=Lon protease
FL= gb:AK061670.1 gb:AK119169.1 gb:AY129070.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3630011/11Lon protease homolog 1, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36260NANA9+20920528..20921690hypothetical protein
LOC_Os09g36270Os.23137.1.S1_at10/119+20928304..20937909Pantothenate kinase 2, putative, expressed
LOC_Os09g36280OsAffx.18009.1.S1_s_at11/119+20938076..20939241Glycosyl hydrolases family 17 protein, expressed
LOC_Os09g36290Os.12157.1.S1_at11/119+20942013..20945412Ser/Thr protein phosphatase family protein, expressed
LOC_Os09g36300Os.10132.1.S1_at11/119+20945436..20952440Lon protease homolog 1, mitochondrial precursor, putative, expressed
LOC_Os09g36310OsAffx.18010.1.S1_at10/119+20959121..20960632hypothetical protein
LOC_Os09g36320Os.17034.1.S1_at11/119+20961747..20967032serine/threonine-protein kinase NAK, putative, expressed
LOC_Os09g36330OsAffx.6492.1.S1_at11/119+20969412..20970433hypothetical protein
LOC_Os09g36340OsAffx.6493.1.S1_at10/119+20971299..20974745HVA22-like protein i, putative
LOC_Os09g36350Os.6247.1.S1_at11/119+20975968..20980170Glycosyl hydrolase family 9 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006510biological_processATP-dependent proteolysis
GO:0005739cellular_componentmitochondrion
GO:0004176molecular_functionATP-dependent peptidase activity
GO:0005524molecular_functionATP binding
GO:0008236molecular_functionserine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10132.1.S1_at--859--1471Chr09:20946277..20946301 (25 bp)
AGCACCCATTCTCTCTGGCTTGGAG
LOC_Os09g36300
Os.10132.1.S1_at--916--3911Chr09:20945994..20946287 (25 bp)
CTGGCTTGGAGATTCTGCTTGTGAA
LOC_Os09g36300
Os.10132.1.S1_at--993--8191Chr09:20945960..20945984 (25 bp)
GGAAGTACTTGACCATGCTTTTGAA
LOC_Os09g36300
Os.10132.1.S1_at--748--10731Chr09:20945940..20945964 (25 bp)
TTGAAGGTGGATGCCCTCTGAGACC
LOC_Os09g36300
Os.10132.1.S1_at--338--9471Chr09:20945924..20945948 (25 bp)
TCTGAGACCACACTCCAAGCTATAG
LOC_Os09g36300
Os.10132.1.S1_at--274--871Chr09:20945882..20945906 (25 bp)
ATGGCGTTTGATCTGGTATACTTTC
LOC_Os09g36300
Os.10132.1.S1_at--1106--291Chr09:20945865..20945889 (25 bp)
ATACTTTCCTGCTGGTTATGTACCT
LOC_Os09g36300
Os.10132.1.S1_at--130--5571Chr09:20945799..20945823 (25 bp)
GAAAGAGCAACTATTCCACGAGGTA
LOC_Os09g36300
Os.10132.1.S1_at--864--10672Chr03:1295028..1295047 (20 bp)
TTCCACGAGGTAGAATCTCACGCCA
NONE
Os.10132.1.S1_at--12--3831Chr09:20945741..20945765 (25 bp)
CTGCCAATCCATCTCGGTTGAGCAA
LOC_Os09g36300
Os.10132.1.S1_at--85--3971Chr09:20945727..20945751 (25 bp)
CGGTTGAGCAACATTCGGAATCTGT
LOC_Os09g36300
Target Sequence 
AGCACCCATTCTCTCTGGCTTGGAGATTCTGCTTGTGAAGCGCATCGAGGAAGTACTTGACCATGCTTTTGAAGGTGGAT
GCCCTCTGAGACCACACTCCAAGCTATAGCATCAACCAATCTGAAGATGGCGTTTGATCTGGTATACTTTCCTGCTGGTT
ATGTACCTATTTTGGAGATTCATCCATAAAACAAGGTTCAGATTTCCATGAAAGAGCAACTATTCCACGAGGTAGAATCT
CACGCCANAACGCAGGCTTGCAGCGCTGCTGCCAATCCATCTCGGTTGAGCAACATTCGGAATCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10132.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis