Browse Element(s) Details


Os.10141.1.S1_at

Description gb:AK067853.1
DB_XREF= gi:32977871
TID=Os.10141.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10141 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013122O17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013122O17, full insert sequence.
FL= gb:AK067853.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5375011/11Narf, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53680NANA3+30738028..30738258hypothetical protein
LOC_Os03g53690Os.55539.1.S1_at11/113+30738832..30739853NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g53700Os.14952.1.A1_at9/113+30742024..30747217PHD-finger family protein, expressed
LOC_Os03g53710Os.52647.1.S1_at11/113+30746891..30748683Aldose 1-epimerase family protein, expressed
LOC_Os03g53720Os.26432.1.S1_at11/113+30753769..30757824protein kinase family protein, putative, expressed
LOC_Os03g53730Os.56988.1.S1_at11/113+30758057..30759117flavodoxin family protein, expressed
LOC_Os03g53740Os.49691.1.S1_at11/113+30759437..30760399expressed protein
LOC_Os03g53750Os.10141.1.S1_at11/113+30760719..30765124Narf, putative, expressed
LOC_Os03g53760OsAffx.25706.1.S1_x_at11/113+30766042..30772826Helicase associated domain family protein, expressed
LOC_Os03g53760Os.47539.1.S1_at11/113+30766042..30772826Helicase associated domain family protein, expressed
LOC_Os03g53760Os.47539.1.S1_s_at11/113+30766042..30772826Helicase associated domain family protein, expressed
LOC_Os03g53770Os.48104.1.A1_s_at11/113+30775598..30779649RNA recognition motif family protein, expressed
LOC_Os03g53770Os.8890.1.S1_at11/113+30775598..30779649RNA recognition motif family protein, expressed
LOC_Os03g53780Os.27256.1.A1_at6/113+30780849..30782343ammonium transporter AMT2.1, putative
LOC_Os03g53790Os.18244.1.S1_at11/113+30786058..30788548Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os03g53790OsAffx.24089.1.S1_x_at1/113+30786058..30788548Glycosyl hydrolase family 3 N terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016948molecular_functioniron hydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10141.1.S1_at--139--891Chr03:30761591..30761615 (25 bp)
AGGCCAGTCTGCGAAGGATCTTATC
LOC_Os03g53750
Os.10141.1.S1_at--1095--2771Chr03:30761150..30761565 (25 bp)
AAGATGTATCGGTATCCAACCCCTT
LOC_Os03g53750
Os.10141.1.S1_at--653--8271Chr03:30761090..30761114 (25 bp)
GGCTTGGGCAACCTGGTTCAGAAAA
LOC_Os03g53750
Os.10141.1.S1_at--770--9851Chr03:30761051..30761075 (25 bp)
TACACACGAAGTATCACCCAGTGGT
LOC_Os03g53750
Os.10141.1.S1_at--412--1631Chr03:30761022..30761046 (25 bp)
AGCGTGGCATCGCAGTTGCAGAATT
LOC_Os03g53750
Os.10141.1.S1_at--749--2331Chr03:30760978..30761002 (25 bp)
AAAGCATTTCCCAGTGTGGGCAGTT
LOC_Os03g53750
Os.10141.1.S1_at--82--5031Chr03:30760959..30760983 (25 bp)
GCAGTTGCTTGTGCCATCTTGGTGC
LOC_Os03g53750
Os.10141.1.S1_at--1047--6591Chr03:30760848..30760872 (25 bp)
GATTGTAGGTTTTACCAGCTTTTCT
LOC_Os03g53750
Os.10141.1.S1_at--542--2991Chr03:30760819..30760843 (25 bp)
AATGTTTGTATACTACCTCCTCACT
LOC_Os03g53750
Os.10141.1.S1_at--769--9971Chr03:30760806..30760830 (25 bp)
TACCTCCTCACTGGGAAACACAGAT
LOC_Os03g53750
Os.10141.1.S1_at--406--6951Chr03:30760745..30760769 (25 bp)
GTAGTTGATCTACTCAGCTGATAAT
LOC_Os03g53750
Target Sequence 
AGGCCAGTCTGCGAAGGATCTTATCCAACTACTAGAGGATGTGTACATCCAAGATGTATCGGTATCCAACCCCTTCGAGA
ACCCTATTGCGAAAAGATTATATGATGAATGGCTTGGGCAACCTGGTTCAGAAAACGCAAAGAAGTATCTACACACGAAG
TATCACCCAGTGGTGAAAAGCGTGGCATCGCAGTTGCAGAATTGGTGATAACACAGTGGTGGAAAGCATTTCCCAGTGTG
GGCAGTTGCTTGTGCCATCTTGGTGCCCTGCCCACACTAAGCAAACACTGAACACACAGAAAAGAAATACACGTCATCAA
AGATTTTGCATGCGGGCAAATGAATTTTGTTAGATTGTAGGTTTTACCAGCTTTTCTTGGTAATGTTTGTATACTACCTC
CTCACTGGGAAACACAGATGAGATTGTAACATGTAAAAACGAAGTGAACCAAATAGTAGTTGATCTACTCAGCTGATAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10141.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis