Browse Element(s) Details


Os.10160.1.S1_at

Description gb:AK061747.1
DB_XREF= gi:32971765
TID=Os.10160.1
CNT=35
FEA=FLmRNA
TIER=FL+Stack
STK=11
UG=Os.10160 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-038-G02, full insert sequence.
FL= gb:AK061747.1 gb:AK098851.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4385011/11Tub family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43820Os.37828.1.S1_at11/115+25391593..25394975RAC-like GTP binding protein ARAC7, putative, expressed
LOC_Os05g43820Os.10032.1.S1_at11/115+25391593..25394975RAC-like GTP binding protein ARAC7, putative, expressed
LOC_Os05g43820Os.45896.1.S1_x_at5/115+25391593..25394975RAC-like GTP binding protein ARAC7, putative, expressed
LOC_Os05g43830Os.5650.1.S1_at9/115+25393874..25401165Proline iminopeptidase, putative, expressed
LOC_Os05g43830Os.10728.1.S1_at1/115+25393874..25401165Proline iminopeptidase, putative, expressed
LOC_Os05g43830Os.10719.1.S1_at1/115+25393874..25401165Proline iminopeptidase, putative, expressed
LOC_Os05g43840Os.12680.1.S1_at11/115+25406143..25408396CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os05g43850Os.10160.1.S1_at11/115+25414129..25418428Tub family protein, expressed
LOC_Os05g43860Os.15784.1.A1_s_at11/115+25419871..25422735expressed protein
LOC_Os05g43860OsAffx.15091.1.S1_at9/115+25419871..25422735expressed protein
LOC_Os05g43870OsAffx.15092.1.S1_at11/115+25424969..25427337expressed protein
LOC_Os05g43880OsAffx.15093.1.S1_x_at11/115+25431847..25432998oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os05g43880OsAffx.15093.1.S1_s_at11/115+25431847..25432998oxidoreductase, 2OG-Fe oxygenase family protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
GO:0008081molecular_functionphosphoric diester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10160.1.S1_at--108--931Chr05:25417813..25417837 (25 bp)
AGGCACCACGATGGCATGAGCATCT
LOC_Os05g43850
Os.10160.1.S1_at--699--10731Chr05:25417851..25417875 (25 bp)
TTGAATTTCCATGGCCGGGTGACCG
LOC_Os05g43850
Os.10160.1.S1_at--556--2131Chr05:25417950..25417974 (25 bp)
ACAGTGATCCTGCAGTTCGGTAAGA
LOC_Os05g43850
Os.10160.1.S1_at--782--8091Chr05:25417979..25418003 (25 bp)
GGACGACGCGTTCACGATGGACTAC
LOC_Os05g43850
Os.10160.1.S1_at--852--10231Chr05:25418052..25418076 (25 bp)
TTTGGCACGAAGCTGGCCTGTGAAT
LOC_Os05g43850
Os.10160.1.S1_at--158--2171Chr05:25418107..25418131 (25 bp)
ACACCGTGCATATGGATGGGATCTC
LOC_Os05g43850
Os.10160.1.S1_at--11--811Chr05:25418122..25418146 (25 bp)
ATGGGATCTCCGTTGATAGCGCGGA
LOC_Os05g43850
Os.10160.1.S1_at--1010--1651Chr05:25418139..25418163 (25 bp)
AGCGCGGATAGCCTGAAGCCCTGAA
LOC_Os05g43850
Os.10160.1.S1_at--1110--291Chr05:25418166..25418190 (25 bp)
ATAGCGCCCCTGTTGAACCAGGAGA
LOC_Os05g43850
Os.10160.1.S1_at--563--3651Chr05:25418259..25418283 (25 bp)
CTTCTCTTTTTCTCTCGTCTAATGA
LOC_Os05g43850
Os.10160.1.S1_at--849--6271Chr05:25418366..25418390 (25 bp)
GATGTACCCCGTGCATAATGAATGT
LOC_Os05g43850
Target Sequence 
AGGCACCACGATGGCATGAGCATCTGCAGTGCTGGTGCTTGAATTTCCATGGCCGGGTGACCGTCGCCTCGGTGAAGAAC
TTCCAGCTCGTTGCTCCAGCTGGCACCAGCGATCCATGGGGCATTGCAGATGAGGAGACAGTGATCCTGCAGTTCGGTAA
GATTGAGGACGACGCGTTCACGATGGACTACCGGCAGCCGCTGTCAGCCTTCCAGGCGTTCGCCATCTGCCTCACAAGCT
TTGGCACGAAGCTGGCCTGTGAATAAGTGTAACTTTTGGGTTTGATGATGATTTACACCGTGCATATGGATGGGATCTCC
GTTGATAGCGCGGATAGCCTGAAGCCCTGAACTATAGCGCCCCTGTTGAACCAGGAGAGTAAGGTGTAAAAGGGCGACAG
GGGCACACTGCACTGAACACACCGNTGTCCCTAACTCTCGACTCTCTCTTCTCTTTTTCTCTCGTCTAATGATGTGGATG
GACTTGGTTTATGTTGATCTTGGAGAGATGATGGTATAACTCTTTGTTGTAAATGGCACTCCTTTTCACTTGCTGATGTA
CCCCGTGCATAATGAATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10160.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis