Browse Element(s) Details


Os.10188.1.S1_at

Description gb:AK112034.1
DB_XREF= gi:37988697
TID=Os.10188.1
CNT=25
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10188 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-039-H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-040-E05, full insert sequence.
FL= gb:AK112034.1 gb:AK104798.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2707011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27030Os.35387.1.S1_at11/118+16380889..16385047Lipid phosphate phosphatase 2, putative, expressed
LOC_Os08g27040Os.20657.1.S1_at11/118+16386668..16391090Lipid phosphate phosphatase 2, putative, expressed
LOC_Os08g27040Os.51117.1.S1_at11/118+16386668..16391090Lipid phosphate phosphatase 2, putative, expressed
LOC_Os08g27050Os.25180.1.S1_at11/118+16392609..16398391hydrolase, alpha/beta fold family protein, expressed
LOC_Os08g27050OsAffx.32230.1.A1_at6/118+16392609..16398391hydrolase, alpha/beta fold family protein, expressed
LOC_Os08g27050OsAffx.32230.1.A1_x_at4/118+16392609..16398391hydrolase, alpha/beta fold family protein, expressed
LOC_Os08g27060OsAffx.5947.1.S1_at11/118+16400080..16401081hypothetical protein
LOC_Os08g27070Os.10188.1.S1_at11/118+16405483..16409850expressed protein
LOC_Os08g27080OsAffx.29377.1.S1_at11/118+16412001..16412252hypothetical protein
LOC_Os08g27090Os.34615.1.S1_at10/118+16413639..1641780630S ribosomal protein S17, putative, expressed
LOC_Os08g27100OsAffx.29378.1.S1_at11/118+16426593..16427736hypothetical protein
LOC_Os08g27110NANA8+16434711..16439146retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10188.1.S1_at--55--4311Chr08:16405884..16405908 (25 bp)
GAAAATCCCAGGAGTCGGACGCTAA
LOC_Os08g27070
Os.10188.1.S1_at--303--372Chr04:31696811..31696838 (24 bp)
ATAATTCCTTTCTCTGTTGCATCCC
NONE
Os.10188.1.S1_at--1051--4191Chr08:16405800..16405824 (25 bp)
CCCGTCTTTTATGGATCTGGTGAAC
LOC_Os08g27070
Os.10188.1.S1_at--1049--7771Chr08:16405740..16405764 (25 bp)
GGTGCTCCCTTGTAGAACGATGCTA
LOC_Os08g27070
Os.10188.1.S1_at--525--1951Chr08:16405711..16405735 (25 bp)
ACTGGAGCTCCAACTGAGTACGCAA
LOC_Os08g27070
Os.10188.1.S1_at--1122--3651Chr08:16405666..16405690 (25 bp)
CTTAATGCGCTTTGATGCTTCATCG
LOC_Os08g27070
Os.10188.1.S1_at--797--9071Chr08:16405651..16405675 (25 bp)
TGCTTCATCGCTCTGCAATCATATA
LOC_Os08g27070
Os.10188.1.S1_at--1130--10391Chr08:16405601..16405625 (25 bp)
TTTTGTGAGATACTGCTGTGCCCGT
LOC_Os08g27070
Os.10188.1.S1_at--232--3711Chr08:16405575..16405599 (25 bp)
CTAGAGTCCACTGAGCATGCAACAA
LOC_Os08g27070
Os.10188.1.S1_at--451--471Chr08:16405542..16405566 (25 bp)
ATCTGACGATGCTTGTGCTAGACGA
LOC_Os08g27070
Os.10188.1.S1_at--902--5011Chr08:16405512..16405536 (25 bp)
GCAGTAGCACTGTTAGTTCCCAAGC
LOC_Os08g27070
Target Sequence 
GAAAATCCCAGGAGTCGGACGCTAAAGCCGAGACAAGTTAGAGCAATCGAAGGCCCCTCTACATAATTCCTTTCTCTGTT
GCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACATTTTACGTTATGACGGTAGGGATGGGTGCTCCCTTGTAGA
ACGATGCTATGAAACTGGAGCTCCAACTGAGTACGCAAACCATTCTTGGATTGTTTTTCTTAATGCGCTTTGATGCTTCA
TCGCTCTGCAATCATATATTAAGCTTTGGATGCTTTAATCTGCTTTTGTGAGATACTGCTGTGCCCGTGCTAGAGTCCAC
TGAGCATGCAACAATTCATGTGATCTGACGATGCTTGTGCTAGACGAGTGAGGCAGTAGCACTGTTAGTTCCCAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10188.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis