Browse Element(s) Details


Os.10194.1.S1_at

Description gb:AK100423.1
DB_XREF= gi:32985632
TID=Os.10194.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10194 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023088B15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023088B15, full insert sequence.
FL= gb:AK100423.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4125011/11U-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41220Os.17140.1.S1_at11/114+24236131..24239951transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g41220Os.17140.1.S1_x_at11/114+24236131..24239951transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g41220OsAffx.12229.1.S1_at2/114+24236131..24239951transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g41220OsAffx.16833.2.S1_at1/114+24236131..24239951transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g41229Os.7694.1.S1_at11/114+24242092..24249850Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g41229Os.51233.1.S1_at11/114+24242092..24249850Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g41250Os.10194.1.S1_at11/114+24252614..24260377U-box domain containing protein, expressed
LOC_Os04g41238Os.52795.1.S1_at11/114+24253348..24254720expressed protein
LOC_Os04g41260Os.55586.1.S1_at10/114+24261662..24265847Protoporphyrinogen oxidase, chloroplast/mitochondrial precursor, putative, expressed
LOC_Os04g41260Os.27575.2.S1_at10/114+24261662..24265847Protoporphyrinogen oxidase, chloroplast/mitochondrial precursor, putative, expressed
LOC_Os04g41270OsAffx.13097.1.S1_s_at11/114+24273435..24276459hypothetical protein
LOC_Os04g41270Os.46613.1.S2_at4/114+24273435..24276459hypothetical protein
LOC_Os04g41280OsAffx.26413.1.S1_at9/114+24278521..24281134expressed protein
LOC_Os04g41290OsAffx.4048.1.S1_x_at11/114+24282957..24286302ankyrin repeat family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10194.1.S1_at--392--1471Chr04:24260020..24260044 (25 bp)
AGAAGGTTCACGAGGGCCCTGGCTA
LOC_Os04g41250
Os.10194.1.S1_at--1063--4531Chr04:24260035..24260059 (25 bp)
GCCCTGGCTAGGTTGCTCAAGAAAT
LOC_Os04g41250
Os.10194.1.S1_at--198--7591Chr04:24260061..24260085 (25 bp)
GGGCATCCGCTGATCTGATCTACTA
LOC_Os04g41250
Os.10194.1.S1_at--221--5431Chr04:24260095..24260119 (25 bp)
GAACCACGTCGGCTAGTGTGAACTT
LOC_Os04g41250
Os.10194.1.S1_at--576--10171Chr04:24260132..24260156 (25 bp)
TATCAATGTTATCTTCCCGTGTGGG
LOC_Os04g41250
Os.10194.1.S1_at--966--7471Chr04:24260152..24260176 (25 bp)
GTGGGTTGACTCACTCGTTTTCGTC
LOC_Os04g41250
Os.10194.1.S1_at--274--71Chr04:24260185..24260209 (25 bp)
ATTGCCGCGATATCCATACTCGTCT
LOC_Os04g41250
Os.10194.1.S1_at--113--331Chr04:24260200..24260224 (25 bp)
ATACTCGTCTCACTTATGCGGGCAT
LOC_Os04g41250
Os.10194.1.S1_at--846--611Chr04:24260215..24260239 (25 bp)
ATGCGGGCATTGACCGTCTCTCTGT
LOC_Os04g41250
Os.10194.1.S1_at--1024--7151Chr04:24260230..24260254 (25 bp)
GTCTCTCTGTACCTATTAACCTTGT
LOC_Os04g41250
Os.10194.1.S1_at--71--6831Chr04:24260279..24260303 (25 bp)
GTTTAAGCTTATTGTGTTTTGCCAA
LOC_Os04g41250
Target Sequence 
AGAAGGTTCACGAGGGCCCTGGCTAGGTTGCTCAAGAAATGGGGCATCCGCTGATCTGATCTACTACAGAGGAAAGAACC
ACGTCGGCTAGTGTGAACTTTGGCAAATGCAATATCAATGTTATCTTCCCGTGTGGGTTGACTCACTCGTTTTCGTCTCC
TTCGCATTGCCGCGATATCCATACTCGTCTCACTTATGCGGGCATTGACCGTCTCTCTGTACCTATTAACCTTGTGCTAA
GGCAAAATTAGTAAAAAGGGTTTAAGCTTATTGTGTTTTGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10194.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis